Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC126365.1-201ENST00000578585 1514 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 RPL5P21-201ENST00000404620 815 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 TTTY23B-201ENST00000442790 549 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 GIMAP3P-201ENST00000495150 836 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 AC025181.2-201ENST00000606994 802 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 AC107373.2-201ENST00000607735 490 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 IGHV3-72-202ENST00000621503 303 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 HSPA7-201ENST00000445535 1927 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 CICP20-201ENST00000443330 2801 ntBASIC14.42□□□□□ -0.1
VMP1Q96GC9 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 AC132938.2-201ENST00000579188 680 ntBASIC14.41□□□□□ -0.1
VMP1Q96GC9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 AC010319.3-201ENST00000597028 470 ntBASIC14.41□□□□□ -0.1
VMP1Q96GC9 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.41□□□□□ -0.1
VMP1Q96GC9 AL591163.1-201ENST00000641757 987 ntBASIC14.41□□□□□ -0.1
VMP1Q96GC9 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.41□□□□□ -0.1
VMP1Q96GC9 AL023775.1-201ENST00000454907 1746 ntBASIC14.41□□□□□ -0.1
VMP1Q96GC9 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VMP1Q96GC9 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms