Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ATG4AQ8WYN0 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 SBF1P1-201ENST00000444527 5631 ntBASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 CICP16-201ENST00000502609 2813 ntBASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ATG4AQ8WYN0 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 C1QBPP1-201ENST00000400117 770 ntBASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 NUS1P3-201ENST00000423502 862 ntBASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 AC134915.1-201ENST00000426461 574 ntBASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 AC124283.3-201ENST00000570869 594 ntBASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 AC079781.5-202ENST00000641784 3743 ntBASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.51■□□□□ 0.07
ATG4AQ8WYN0 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms