Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 AC022144.1-201ENST00000602255 1580 ntBASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 CLK3P2-201ENST00000427566 1453 ntBASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 RN7SL399P-201ENST00000471648 279 ntBASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 AC009407.1-201ENST00000568958 598 ntBASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CCDC54Q8NEL0 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 MTHFR-210ENST00000641407 2387 ntBASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 AC018529.2-202ENST00000611482 3087 ntBASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC54Q8NEL0 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms