Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 SHC1P1-201ENST00000425230 1745 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TEX35-203ENST00000367641 2377 ntAPPRIS ALT2 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ANAPC7-203ENST00000455511 3045 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 F2RL3-201ENST00000248076 3473 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 CICP18-201ENST00000406017 2812 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZNF747-201ENST00000252799 3936 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC087164.2-201ENST00000624514 3130 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 SERINC5-202ENST00000507668 6479 ntAPPRIS P1 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 SLC9A3P2-201ENST00000447821 2021 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 DOCK6-201ENST00000294618 6358 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 NAPB-207ENST00000617876 3883 ntAPPRIS ALT1 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 POLR1B-201ENST00000263331 4558 ntAPPRIS P1 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 RBM4-205ENST00000409406 2321 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AC006254.1-201ENST00000468472 5640 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 P3H2-201ENST00000319332 3509 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 SRRM2-AS1-201ENST00000382313 3523 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 NOSTRIN-203ENST00000397209 1437 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AGAP12P-201ENST00000585227 2359 ntBASIC9.23□□□□□ -0.93
LINC00643Q86TS7 WT1-AS-201ENST00000395900 3828 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TK1-203ENST00000588734 1681 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 PLEKHA6-202ENST00000414478 5091 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AL354861.3-201ENST00000600140 2412 ntBASIC9.23□□□□□ -0.93
LINC00643Q86TS7 WDR27-203ENST00000448612 3178 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 FAM198B-207ENST00000592057 3425 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 LRFN3-204ENST00000588831 3689 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 CLK3P2-201ENST00000427566 1453 ntBASIC9.23□□□□□ -0.93
LINC00643Q86TS7 OPRK1-206ENST00000613482 4682 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 BCL2L11-223ENST00000622612 4995 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 PTPRS-202ENST00000353284 4518 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 COL8A1-202ENST00000273342 3029 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 MLF1-209ENST00000482628 1050 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 HYLS1-202ENST00000425380 2061 ntAPPRIS P1 TSL 3 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 DYRK4-214ENST00000543431 2068 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ZNF302-203ENST00000457781 2600 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 DPYSL2-206ENST00000523027 2130 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ZIC3-201ENST00000287538 3469 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 SP140L-203ENST00000415673 2665 ntAPPRIS P3 TSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 CA14-201ENST00000369111 2403 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC9.23□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms