Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 SURF4-203ENST00000371991 715 ntTSL 3 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 ACTG1P19-201ENST00000418987 1116 ntBASIC19.84■□□□□ 0.77
NPHP3Q7Z494 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 AC027139.1-201ENST00000565286 951 ntBASIC19.84■□□□□ 0.77
NPHP3Q7Z494 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
NPHP3Q7Z494 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 OR8T1P-201ENST00000421347 918 ntBASIC19.83■□□□□ 0.77
NPHP3Q7Z494 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 ELP5-212ENST00000574255 671 ntTSL 2 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 AL118522.1-201ENST00000611368 560 ntBASIC19.83■□□□□ 0.77
NPHP3Q7Z494 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.83■□□□□ 0.77
NPHP3Q7Z494 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP3Q7Z494 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC19.83■□□□□ 0.76
NPHP3Q7Z494 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.83■□□□□ 0.76
NPHP3Q7Z494 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP3Q7Z494 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.83■□□□□ 0.76
NPHP3Q7Z494 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 DOC2GP-204ENST00000639052 2548 ntBASIC19.82■□□□□ 0.76
NPHP3Q7Z494 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 PKD1P1-201ENST00000458669 6805 ntBASIC19.82■□□□□ 0.76
NPHP3Q7Z494 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AL357373.1-201ENST00000394974 322 ntBASIC19.82■□□□□ 0.76
NPHP3Q7Z494 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 RNA5SP406-201ENST00000516106 112 ntBASIC19.82■□□□□ 0.76
NPHP3Q7Z494 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AC010632.2-201ENST00000588369 1224 ntBASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AL139339.2-201ENST00000608063 657 ntBASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AC006483.2-201ENST00000609813 515 ntBASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP3Q7Z494 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 AC092580.1-201ENST00000433998 658 ntBASIC19.81■□□□□ 0.76
NPHP3Q7Z494 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP3Q7Z494 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms