Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 REXO1L6P-201ENST00000603433 1515 ntBASIC16.81■□□□□ 0.28
USP11P51784 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.81■□□□□ 0.28
USP11P51784 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 AL390755.1-201ENST00000623716 2027 ntBASIC16.81■□□□□ 0.28
USP11P51784 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.81■□□□□ 0.28
USP11P51784 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.81■□□□□ 0.28
USP11P51784 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.81■□□□□ 0.28
USP11P51784 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 AL591846.1-201ENST00000451736 433 ntBASIC16.81■□□□□ 0.28
USP11P51784 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.81■□□□□ 0.28
USP11P51784 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.81■□□□□ 0.28
USP11P51784 AC009955.4-201ENST00000597192 544 ntBASIC16.81■□□□□ 0.28
USP11P51784 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.81■□□□□ 0.28
USP11P51784 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
USP11P51784 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 AL590440.2-201ENST00000641973 1595 ntBASIC16.81■□□□□ 0.28
USP11P51784 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.81■□□□□ 0.28
USP11P51784 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USP11P51784 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 AC106881.1-201ENST00000605849 3329 ntBASIC16.8■□□□□ 0.28
USP11P51784 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 AC139712.1-201ENST00000378256 1875 ntBASIC16.8■□□□□ 0.28
USP11P51784 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 MIR663B-201ENST00000408361 115 ntBASIC16.8■□□□□ 0.28
USP11P51784 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.8■□□□□ 0.28
USP11P51784 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
USP11P51784 ACTBP11-201ENST00000436287 1126 ntBASIC16.8■□□□□ 0.28
USP11P51784 CICP12-201ENST00000455801 843 ntBASIC16.8■□□□□ 0.28
USP11P51784 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.8■□□□□ 0.28
USP11P51784 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
USP11P51784 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.8■□□□□ 0.28
USP11P51784 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.8■□□□□ 0.28
USP11P51784 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP11P51784 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP11P51784 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP11P51784 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP11P51784 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP11P51784 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP11P51784 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP11P51784 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.79■□□□□ 0.28
USP11P51784 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP11P51784 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms