Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LIG3P49916 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
LIG3P49916 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 AC136604.1-201ENST00000418535 575 ntBASIC15.84■□□□□ 0.13
LIG3P49916 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 RPL13P2-201ENST00000440687 659 ntBASIC15.84■□□□□ 0.13
LIG3P49916 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LIG3P49916 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
LIG3P49916 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
LIG3P49916 AC027307.3-201ENST00000594262 1100 ntBASIC15.84■□□□□ 0.13
LIG3P49916 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
LIG3P49916 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
LIG3P49916 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.83■□□□□ 0.13
LIG3P49916 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
LIG3P49916 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LIG3P49916 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.83■□□□□ 0.13
LIG3P49916 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
LIG3P49916 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LIG3P49916 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.83■□□□□ 0.13
LIG3P49916 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.83■□□□□ 0.12
LIG3P49916 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
LIG3P49916 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 AC087499.6-201ENST00000411576 835 ntBASIC15.83■□□□□ 0.12
LIG3P49916 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.83■□□□□ 0.12
LIG3P49916 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.83■□□□□ 0.12
LIG3P49916 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.83■□□□□ 0.12
LIG3P49916 MEIS3P1-201ENST00000495167 958 ntBASIC15.83■□□□□ 0.12
LIG3P49916 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.83■□□□□ 0.12
LIG3P49916 AP005018.1-201ENST00000525475 301 ntBASIC15.83■□□□□ 0.12
LIG3P49916 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.83■□□□□ 0.12
LIG3P49916 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.83■□□□□ 0.12
LIG3P49916 AC097359.3-201ENST00000603982 1210 ntBASIC15.83■□□□□ 0.12
LIG3P49916 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 SLC7A15P-201ENST00000424028 1363 ntBASIC15.83■□□□□ 0.12
LIG3P49916 AL391825.1-201ENST00000457671 1364 ntBASIC15.83■□□□□ 0.12
LIG3P49916 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
LIG3P49916 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
LIG3P49916 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
LIG3P49916 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
LIG3P49916 STK40-201ENST00000359297 4837 ntTSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
LIG3P49916 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
LIG3P49916 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LIG3P49916 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 NUTM2HP-201ENST00000442076 2498 ntBASIC15.82■□□□□ 0.12
LIG3P49916 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms