Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 AC097359.2-201ENST00000604992 2389 ntBASIC13.2□□□□□ -0.3
CX3CR1P49238 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.2□□□□□ -0.3
CX3CR1P49238 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.2□□□□□ -0.3
CX3CR1P49238 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC13.2□□□□□ -0.3
CX3CR1P49238 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.2□□□□□ -0.3
CX3CR1P49238 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.2□□□□□ -0.3
CX3CR1P49238 SPDYE22P-201ENST00000582158 798 ntBASIC13.2□□□□□ -0.3
CX3CR1P49238 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.2□□□□□ -0.3
CX3CR1P49238 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.2□□□□□ -0.3
CX3CR1P49238 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 AC093726.1-201ENST00000608064 963 ntBASIC13.2□□□□□ -0.3
CX3CR1P49238 MIR8072-201ENST00000614241 80 ntBASIC13.2□□□□□ -0.3
CX3CR1P49238 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CX3CR1P49238 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CR1P49238 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CR1P49238 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CR1P49238 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.19□□□□□ -0.3
CX3CR1P49238 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.19□□□□□ -0.3
CX3CR1P49238 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 AL139094.1-201ENST00000405549 1188 ntBASIC13.19□□□□□ -0.3
CX3CR1P49238 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.19□□□□□ -0.3
CX3CR1P49238 SOCS2P1-201ENST00000417727 557 ntBASIC13.19□□□□□ -0.3
CX3CR1P49238 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 AL442647.2-201ENST00000429864 857 ntBASIC13.19□□□□□ -0.3
CX3CR1P49238 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.19□□□□□ -0.3
CX3CR1P49238 UGT1A2P-201ENST00000454886 866 ntBASIC13.19□□□□□ -0.3
CX3CR1P49238 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.19□□□□□ -0.3
CX3CR1P49238 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.19□□□□□ -0.3
CX3CR1P49238 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.19□□□□□ -0.3
CX3CR1P49238 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 KRT8P14-201ENST00000414254 1442 ntBASIC13.19□□□□□ -0.3
CX3CR1P49238 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
CX3CR1P49238 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CX3CR1P49238 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CR1P49238 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.19□□□□□ -0.3
CX3CR1P49238 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms