Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 AC007787.1-201ENST00000588095 1583 ntBASIC14.14□□□□□ -0.15
SOX3P41225 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.14□□□□□ -0.15
SOX3P41225 RNU1-114P-201ENST00000365297 166 ntBASIC14.14□□□□□ -0.15
SOX3P41225 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 BOLA2P3-201ENST00000404566 256 ntBASIC14.14□□□□□ -0.15
SOX3P41225 MIR1909-201ENST00000411312 80 ntBASIC14.14□□□□□ -0.15
SOX3P41225 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.14□□□□□ -0.15
SOX3P41225 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.14□□□□□ -0.15
SOX3P41225 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.14□□□□□ -0.15
SOX3P41225 MIR6805-201ENST00000615055 62 ntBASIC14.14□□□□□ -0.15
SOX3P41225 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 AL645728.2-202ENST00000641679 227 ntBASIC14.14□□□□□ -0.15
SOX3P41225 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.14□□□□□ -0.15
SOX3P41225 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 CICP11-201ENST00000434745 2827 ntBASIC14.14□□□□□ -0.15
SOX3P41225 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.14□□□□□ -0.15
SOX3P41225 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
SOX3P41225 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.13□□□□□ -0.15
SOX3P41225 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SOX3P41225 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX3P41225 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
SOX3P41225 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SOX3P41225 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX3P41225 MIR658-201ENST00000385210 100 ntBASIC14.13□□□□□ -0.15
SOX3P41225 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SOX3P41225 AC092933.1-201ENST00000393644 945 ntBASIC14.13□□□□□ -0.15
SOX3P41225 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.13□□□□□ -0.15
SOX3P41225 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX3P41225 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 AC022210.1-201ENST00000449856 793 ntBASIC14.13□□□□□ -0.15
SOX3P41225 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SOX3P41225 SNX29P1-201ENST00000548357 1007 ntBASIC14.13□□□□□ -0.15
SOX3P41225 SAMD11P1-201ENST00000571429 661 ntBASIC14.13□□□□□ -0.15
SOX3P41225 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX3P41225 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.13□□□□□ -0.15
SOX3P41225 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.13□□□□□ -0.15
SOX3P41225 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX3P41225 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SOX3P41225 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX3P41225 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 PDIA3P1-201ENST00000471856 1510 ntBASIC14.13□□□□□ -0.15
SOX3P41225 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms