Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL021707.6-201ENST00000609212 491 ntBASIC17.37■□□□□ 0.37
COL4A5P29400 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL4A5P29400 MIR6746-201ENST00000620971 63 ntBASIC17.37■□□□□ 0.37
COL4A5P29400 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 ZNF436-AS1-201ENST00000335648 2547 ntBASIC17.37■□□□□ 0.37
COL4A5P29400 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.37■□□□□ 0.37
COL4A5P29400 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC17.37■□□□□ 0.37
COL4A5P29400 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL4A5P29400 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.37■□□□□ 0.37
COL4A5P29400 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.36■□□□□ 0.37
COL4A5P29400 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
COL4A5P29400 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A5P29400 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A5P29400 GOLGA2P7-209ENST00000560408 745 ntBASIC17.36■□□□□ 0.37
COL4A5P29400 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A5P29400 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 AC015688.4-201ENST00000580780 1647 ntBASIC17.36■□□□□ 0.37
COL4A5P29400 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
COL4A5P29400 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL4A5P29400 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A5P29400 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC17.36■□□□□ 0.37
COL4A5P29400 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A5P29400 CHCHD2P2-201ENST00000503744 321 ntBASIC17.36■□□□□ 0.37
COL4A5P29400 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.36■□□□□ 0.37
COL4A5P29400 FOXN3-AS2-201ENST00000554071 1262 ntBASIC17.36■□□□□ 0.37
COL4A5P29400 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.36■□□□□ 0.37
COL4A5P29400 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL4A5P29400 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL4A5P29400 LAP3P2-201ENST00000454686 1454 ntBASIC17.35■□□□□ 0.37
COL4A5P29400 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
COL4A5P29400 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A5P29400 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A5P29400 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A5P29400 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL4A5P29400 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC17.35■□□□□ 0.37
COL4A5P29400 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL4A5P29400 AL929302.1-201ENST00000426556 871 ntBASIC17.35■□□□□ 0.37
COL4A5P29400 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC17.35■□□□□ 0.37
COL4A5P29400 BPIFB5P-201ENST00000457066 1099 ntBASIC17.35■□□□□ 0.37
COL4A5P29400 AC083801.1-201ENST00000491689 358 ntBASIC17.35■□□□□ 0.37
COL4A5P29400 ALG1L3P-201ENST00000503331 765 ntBASIC17.35■□□□□ 0.37
COL4A5P29400 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC17.35■□□□□ 0.37
COL4A5P29400 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.35■□□□□ 0.37
COL4A5P29400 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.35■□□□□ 0.37
COL4A5P29400 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A5P29400 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms