Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A3P25940 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
COL5A3P25940 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC18.17■□□□□ 0.5
COL5A3P25940 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 RBM4-207ENST00000506523 654 ntTSL 3 BASIC18.17■□□□□ 0.5
COL5A3P25940 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC18.17■□□□□ 0.5
COL5A3P25940 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC18.17■□□□□ 0.5
COL5A3P25940 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A3P25940 RN7SL455P-201ENST00000580629 282 ntBASIC18.17■□□□□ 0.5
COL5A3P25940 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 KRT8P18-201ENST00000413425 1445 ntBASIC18.17■□□□□ 0.5
COL5A3P25940 AC091951.1-201ENST00000512854 2465 ntBASIC18.17■□□□□ 0.5
COL5A3P25940 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A3P25940 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 ODCP-201ENST00000459650 1639 ntBASIC18.16■□□□□ 0.5
COL5A3P25940 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.16■□□□□ 0.5
COL5A3P25940 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.16■□□□□ 0.5
COL5A3P25940 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC18.16■□□□□ 0.5
COL5A3P25940 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 OR52M2P-201ENST00000414298 959 ntBASIC18.16■□□□□ 0.5
COL5A3P25940 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 RN7SL582P-201ENST00000491078 279 ntBASIC18.16■□□□□ 0.5
COL5A3P25940 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL5A3P25940 ABHD17AP9-201ENST00000561925 548 ntBASIC18.16■□□□□ 0.5
COL5A3P25940 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC18.16■□□□□ 0.5
COL5A3P25940 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
COL5A3P25940 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC18.16■□□□□ 0.5
COL5A3P25940 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL5A3P25940 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL5A3P25940 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL5A3P25940 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
COL5A3P25940 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC18.16■□□□□ 0.5
COL5A3P25940 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC18.16■□□□□ 0.5
COL5A3P25940 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A3P25940 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 STK24P1-201ENST00000455035 1291 ntBASIC18.15■□□□□ 0.5
COL5A3P25940 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A3P25940 KRT18P37-201ENST00000520711 1282 ntBASIC18.15■□□□□ 0.5
COL5A3P25940 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 AC092862.1-201ENST00000541534 533 ntBASIC18.15■□□□□ 0.5
COL5A3P25940 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A3P25940 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL5A3P25940 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A3P25940 AL354702.1-201ENST00000442006 1960 ntBASIC18.15■□□□□ 0.5
COL5A3P25940 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A3P25940 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A3P25940 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A3P25940 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC18.15■□□□□ 0.5
COL5A3P25940 CISD2-202ENST00000503643 808 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A3P25940 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC18.15■□□□□ 0.5
COL5A3P25940 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms