Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.61■□□□□ 0.73
CSB-PGBD3P0DP91 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CSB-PGBD3P0DP91 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 PRORSD1P-202ENST00000563365 2154 ntBASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 RNA5SP359-201ENST00000364838 113 ntBASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 HNRNPA1P27-201ENST00000412087 955 ntBASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 DUTP3-201ENST00000450025 415 ntBASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 AC130709.1-201ENST00000484779 1212 ntBASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 NDUFS6P1-201ENST00000485187 316 ntBASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC19.6■□□□□ 0.73
CSB-PGBD3P0DP91 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 RPL18AP3-201ENST00000462885 528 ntBASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 AP003398.1-201ENST00000531124 318 ntBASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 MIR6858-201ENST00000620733 67 ntBASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 TMBIM7P-202ENST00000641474 1516 ntBASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.59■□□□□ 0.73
CSB-PGBD3P0DP91 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CSB-PGBD3P0DP91 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 PTK2-225ENST00000520892 571 ntTSL 4 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 AC107464.3-201ENST00000609172 737 ntBASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 AC073911.3-201ENST00000624401 631 ntBASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms