Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CXCL1P09341 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CXCL1P09341 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 CENPM-204ENST00000402420 688 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 CRYGEP-201ENST00000412192 528 ntBASIC11.63□□□□□ -0.55
CXCL1P09341 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 UNC93B6-202ENST00000528242 690 ntBASIC11.63□□□□□ -0.55
CXCL1P09341 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 TPM1-226ENST00000560959 925 ntTSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC11.63□□□□□ -0.55
CXCL1P09341 SERF2-217ENST00000630046 862 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 NPTN-IT1-201ENST00000628401 2283 ntBASIC11.63□□□□□ -0.55
CXCL1P09341 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 AC134407.3-201ENST00000624035 2139 ntBASIC11.63□□□□□ -0.55
CXCL1P09341 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 AC107375.1-201ENST00000564464 2231 ntBASIC11.63□□□□□ -0.55
CXCL1P09341 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 AGAP10P-201ENST00000454844 2418 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 AC084364.1-201ENST00000551967 1556 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 SUPT20HL1-201ENST00000436466 2618 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC11.62□□□□□ -0.55
CXCL1P09341 SKP2-204ENST00000508514 821 ntTSL 3 BASIC11.62□□□□□ -0.55
CXCL1P09341 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC105233.2-201ENST00000523697 349 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 AF228730.5-201ENST00000530288 346 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC010507.1-201ENST00000633895 436 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
CXCL1P09341 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
CXCL1P09341 AC022497.1-201ENST00000624916 3691 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms