Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 AC073413.1-201ENST00000603927 732 ntBASIC15.8■□□□□ 0.12
RTN3O95197 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
RTN3O95197 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.8■□□□□ 0.12
RTN3O95197 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.8■□□□□ 0.12
RTN3O95197 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
RTN3O95197 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RTN3O95197 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
RTN3O95197 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.8■□□□□ 0.12
RTN3O95197 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RTN3O95197 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 AC015818.8-201ENST00000587907 1519 ntBASIC15.79■□□□□ 0.12
RTN3O95197 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 AL136309.1-201ENST00000403917 691 ntBASIC15.79■□□□□ 0.12
RTN3O95197 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.79■□□□□ 0.12
RTN3O95197 AC079178.1-201ENST00000420915 656 ntBASIC15.79■□□□□ 0.12
RTN3O95197 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.79■□□□□ 0.12
RTN3O95197 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.79■□□□□ 0.12
RTN3O95197 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RTN3O95197 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.79■□□□□ 0.12
RTN3O95197 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RTN3O95197 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.79■□□□□ 0.12
RTN3O95197 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.79■□□□□ 0.12
RTN3O95197 AL109954.1-202ENST00000564051 2148 ntBASIC15.79■□□□□ 0.12
RTN3O95197 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RTN3O95197 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 REXO1L2P-201ENST00000425429 2069 ntBASIC15.79■□□□□ 0.12
RTN3O95197 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RTN3O95197 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
RTN3O95197 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 MIR326-201ENST00000362220 95 ntBASIC15.78■□□□□ 0.12
RTN3O95197 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RTN3O95197 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RTN3O95197 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.78■□□□□ 0.12
RTN3O95197 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 MTX1P1-201ENST00000440904 838 ntBASIC15.78■□□□□ 0.12
RTN3O95197 GOLGA2P4-201ENST00000441462 777 ntBASIC15.78■□□□□ 0.12
RTN3O95197 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.78■□□□□ 0.12
RTN3O95197 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.78■□□□□ 0.12
RTN3O95197 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 AP003171.2-201ENST00000528208 925 ntBASIC15.78■□□□□ 0.12
RTN3O95197 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.78■□□□□ 0.12
RTN3O95197 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.78■□□□□ 0.12
RTN3O95197 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms