Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CHMP2AO43633 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.82■□□□□ 0.28
CHMP2AO43633 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP2AO43633 AC018529.2-202ENST00000611482 3087 ntBASIC16.82■□□□□ 0.28
CHMP2AO43633 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.82■□□□□ 0.28
CHMP2AO43633 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP2AO43633 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.82■□□□□ 0.28
CHMP2AO43633 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP2AO43633 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP2AO43633 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CHMP2AO43633 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP2AO43633 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.82■□□□□ 0.28
CHMP2AO43633 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP2AO43633 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP2AO43633 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP2AO43633 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CHMP2AO43633 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CHMP2AO43633 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP2AO43633 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CHMP2AO43633 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP2AO43633 MIR4538-201ENST00000581377 78 ntBASIC16.81■□□□□ 0.28
CHMP2AO43633 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.81■□□□□ 0.28
CHMP2AO43633 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.81■□□□□ 0.28
CHMP2AO43633 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 ZACNP1-201ENST00000612259 710 ntBASIC16.81■□□□□ 0.28
CHMP2AO43633 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 AC007686.3-201ENST00000619017 3487 ntBASIC16.81■□□□□ 0.28
CHMP2AO43633 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CHMP2AO43633 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP2AO43633 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP2AO43633 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP2AO43633 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.8■□□□□ 0.28
CHMP2AO43633 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP2AO43633 LINC02228-204ENST00000642115 2962 ntBASIC16.8■□□□□ 0.28
CHMP2AO43633 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.8■□□□□ 0.28
CHMP2AO43633 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP2AO43633 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP2AO43633 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.8■□□□□ 0.28
CHMP2AO43633 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.8■□□□□ 0.28
CHMP2AO43633 MTX1P1-201ENST00000440904 838 ntBASIC16.8■□□□□ 0.28
CHMP2AO43633 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.8■□□□□ 0.28
CHMP2AO43633 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.8■□□□□ 0.28
CHMP2AO43633 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CHMP2AO43633 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.8■□□□□ 0.28
CHMP2AO43633 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.8■□□□□ 0.28
CHMP2AO43633 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP2AO43633 AC091271.1-201ENST00000611877 1162 ntBASIC16.8■□□□□ 0.28
CHMP2AO43633 AC002472.3-201ENST00000640124 621 ntBASIC16.8■□□□□ 0.28
CHMP2AO43633 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP2AO43633 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP2AO43633 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms