Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.1□□□□□ -0.47
HMGB3O15347 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 METTL26-205ENST00000397666 726 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 CRYGEP-201ENST00000412192 528 ntBASIC12.1□□□□□ -0.47
HMGB3O15347 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
HMGB3O15347 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC12.1□□□□□ -0.47
HMGB3O15347 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC12.1□□□□□ -0.47
HMGB3O15347 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC12.1□□□□□ -0.47
HMGB3O15347 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.1□□□□□ -0.47
HMGB3O15347 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
HMGB3O15347 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 KCNJ10-201ENST00000368089 5528 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 INVS-201ENST00000262456 2968 ntTSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 AC015802.1-201ENST00000588104 1449 ntBASIC12.1□□□□□ -0.47
HMGB3O15347 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 MIR497HG-202ENST00000572453 3838 ntBASIC12.1□□□□□ -0.47
HMGB3O15347 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HMGB3O15347 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC12.1□□□□□ -0.47
HMGB3O15347 AC105206.1-202ENST00000314927 2368 ntBASIC12.1□□□□□ -0.47
HMGB3O15347 PPT1-213ENST00000641319 2388 ntBASIC12.1□□□□□ -0.47
HMGB3O15347 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 CUL9-201ENST00000252050 7780 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HMGB3O15347 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC12.09□□□□□ -0.47
HMGB3O15347 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 AC130686.1-201ENST00000622936 2466 ntBASIC12.09□□□□□ -0.47
HMGB3O15347 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.09□□□□□ -0.47
HMGB3O15347 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.09□□□□□ -0.47
HMGB3O15347 AC011467.4-201ENST00000594891 528 ntBASIC12.09□□□□□ -0.47
HMGB3O15347 AC023141.13-201ENST00000604991 943 ntBASIC12.09□□□□□ -0.47
HMGB3O15347 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.09□□□□□ -0.47
HMGB3O15347 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.09□□□□□ -0.47
HMGB3O15347 AL359183.1-201ENST00000623796 2132 ntBASIC12.09□□□□□ -0.47
HMGB3O15347 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.09□□□□□ -0.47
HMGB3O15347 FOXO1B-201ENST00000504678 1527 ntBASIC12.09□□□□□ -0.47
HMGB3O15347 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
HMGB3O15347 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
HMGB3O15347 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.09□□□□□ -0.47
HMGB3O15347 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.09□□□□□ -0.47
HMGB3O15347 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
HMGB3O15347 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.09□□□□□ -0.47
HMGB3O15347 NRP1-206ENST00000374867 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms