Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 AJ011932.1-201ENST00000621707 465 ntBASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 HSPA7-201ENST00000445535 1927 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AC126335.2-201ENST00000623362 4637 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AC087499.6-201ENST00000411576 835 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AC098850.1-201ENST00000419919 790 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 SERBP1P5-201ENST00000510079 1181 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AC022447.6-201ENST00000515522 438 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AL132655.2-201ENST00000596276 594 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AC133539.2-201ENST00000604757 467 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AP005019.2-201ENST00000615104 511 ntBASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HIF3AQ9Y2N7 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 EIF3FP3-201ENST00000434851 1086 ntBASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 AC026434.2-201ENST00000506094 1078 ntBASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms