Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 RN7SKP230-201ENST00000365642 335 ntBASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 C2orf27AP3-201ENST00000434123 579 ntBASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 ECM1P1-201ENST00000604092 1279 ntBASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 AC138696.2-201ENST00000607376 223 ntBASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 AL354718.3-201ENST00000616414 581 ntBASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 CR382287.1-201ENST00000623954 586 ntBASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 AC011840.2-201ENST00000563063 1520 ntBASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
AP4E1Q9UPM8 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AL009178.2-201ENST00000597278 2719 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AP001267.2-201ENST00000532619 2086 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AC097376.2-205ENST00000610159 5334 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AC097359.2-201ENST00000604992 2389 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 TPM3P8-201ENST00000330554 643 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AL590640.2-201ENST00000457038 527 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 FTH1P14-201ENST00000482930 551 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AC132938.4-201ENST00000623835 848 ntBASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP4E1Q9UPM8 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
AP4E1Q9UPM8 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 AC007191.1-201ENST00000623179 2995 ntBASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP4E1Q9UPM8 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms