Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 AP000344.2-201ENST00000512987 629 ntBASIC13□□□□□ -0.33
CHMP1AQ9HD42 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 AL079307.3-201ENST00000556114 283 ntBASIC13□□□□□ -0.33
CHMP1AQ9HD42 AC015910.1-201ENST00000579400 975 ntBASIC13□□□□□ -0.33
CHMP1AQ9HD42 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 AL133215.2-201ENST00000609242 977 ntBASIC13□□□□□ -0.33
CHMP1AQ9HD42 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 AC097359.2-201ENST00000604992 2389 ntBASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 OR2I1P-208ENST00000641137 4948 ntBASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CHMP1AQ9HD42 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AP000845.1-201ENST00000581677 2131 ntBASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 AC012508.2-201ENST00000567613 1472 ntBASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CHMP1AQ9HD42 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms