Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
ABCA3Q99758 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.13■□□□□ 0.65
ABCA3Q99758 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC19.13■□□□□ 0.65
ABCA3Q99758 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 AL391005.1-201ENST00000623953 2435 ntBASIC19.13■□□□□ 0.65
ABCA3Q99758 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA3Q99758 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC19.13■□□□□ 0.65
ABCA3Q99758 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC19.13■□□□□ 0.65
ABCA3Q99758 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA3Q99758 RN7SL455P-201ENST00000580629 282 ntBASIC19.13■□□□□ 0.65
ABCA3Q99758 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA3Q99758 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.13■□□□□ 0.65
ABCA3Q99758 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA3Q99758 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA3Q99758 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA3Q99758 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
ABCA3Q99758 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
ABCA3Q99758 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ABCA3Q99758 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA3Q99758 CDCA4P4-201ENST00000435216 680 ntBASIC19.12■□□□□ 0.65
ABCA3Q99758 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC19.12■□□□□ 0.65
ABCA3Q99758 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
ABCA3Q99758 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA3Q99758 AC113347.2-201ENST00000512350 279 ntBASIC19.12■□□□□ 0.65
ABCA3Q99758 CASP3-205ENST00000517513 964 ntTSL 5 BASIC19.12■□□□□ 0.65
ABCA3Q99758 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC19.12■□□□□ 0.65
ABCA3Q99758 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC19.12■□□□□ 0.65
ABCA3Q99758 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA3Q99758 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA3Q99758 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ABCA3Q99758 PGAM1P11-201ENST00000416729 680 ntBASIC19.11■□□□□ 0.65
ABCA3Q99758 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC19.11■□□□□ 0.65
ABCA3Q99758 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ABCA3Q99758 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC19.11■□□□□ 0.65
ABCA3Q99758 PRSS3P1-201ENST00000503996 742 ntBASIC19.11■□□□□ 0.65
ABCA3Q99758 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC19.11■□□□□ 0.65
ABCA3Q99758 EEF1GP8-201ENST00000506566 1154 ntBASIC19.11■□□□□ 0.65
ABCA3Q99758 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC19.11■□□□□ 0.65
ABCA3Q99758 RN7SKP155-201ENST00000516031 288 ntBASIC19.11■□□□□ 0.65
ABCA3Q99758 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ABCA3Q99758 AL359091.4-201ENST00000610052 409 ntBASIC19.11■□□□□ 0.65
ABCA3Q99758 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ABCA3Q99758 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC19.11■□□□□ 0.65
ABCA3Q99758 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC19.11■□□□□ 0.65
ABCA3Q99758 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.11■□□□□ 0.65
ABCA3Q99758 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
ABCA3Q99758 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.11■□□□□ 0.65
ABCA3Q99758 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC19.11■□□□□ 0.65
ABCA3Q99758 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 SERBP1P2-201ENST00000436888 1164 ntBASIC19.11■□□□□ 0.65
ABCA3Q99758 RN7SL128P-201ENST00000467883 305 ntBASIC19.11■□□□□ 0.65
ABCA3Q99758 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC19.11■□□□□ 0.65
ABCA3Q99758 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
ABCA3Q99758 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA3Q99758 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
ABCA3Q99758 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA3Q99758 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA3Q99758 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
ABCA3Q99758 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA3Q99758 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
ABCA3Q99758 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA3Q99758 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA3Q99758 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
ABCA3Q99758 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA3Q99758 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
ABCA3Q99758 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms