Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AC091812.3-201ENST00000621362 345 ntBASIC22.98■■□□□ 1.27
VPS8Q8N3P4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC22.98■■□□□ 1.27
VPS8Q8N3P4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC22.98■■□□□ 1.27
VPS8Q8N3P4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC22.98■■□□□ 1.27
VPS8Q8N3P4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
VPS8Q8N3P4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 HNRNPA1P41-201ENST00000397777 928 ntBASIC22.97■■□□□ 1.27
VPS8Q8N3P4 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 PDIA3P2-201ENST00000428073 158 ntBASIC22.97■■□□□ 1.27
VPS8Q8N3P4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
VPS8Q8N3P4 AC090505.1-201ENST00000430515 1834 ntBASIC22.97■■□□□ 1.27
VPS8Q8N3P4 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AC015802.1-201ENST00000588104 1449 ntBASIC22.96■■□□□ 1.27
VPS8Q8N3P4 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AL008707.1-201ENST00000422498 534 ntBASIC22.96■■□□□ 1.27
VPS8Q8N3P4 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AL606495.2-201ENST00000605867 535 ntBASIC22.96■■□□□ 1.27
VPS8Q8N3P4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 LINC01165-201ENST00000445190 1623 ntBASIC22.96■■□□□ 1.27
VPS8Q8N3P4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS8Q8N3P4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.27
VPS8Q8N3P4 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.27
VPS8Q8N3P4 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
VPS8Q8N3P4 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
VPS8Q8N3P4 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 NME6-203ENST00000415644 849 ntTSL 2 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 TPI1-206ENST00000488464 791 ntTSL 5 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 DRG2-220ENST00000583355 891 ntTSL 3 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC22.95■■□□□ 1.26
VPS8Q8N3P4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
VPS8Q8N3P4 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
VPS8Q8N3P4 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
VPS8Q8N3P4 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
VPS8Q8N3P4 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
VPS8Q8N3P4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
VPS8Q8N3P4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms