Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC19.23■□□□□ 0.67
USP54Q70EL1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 NME4-203ENST00000397722 1232 ntTSL 2 BASIC19.23■□□□□ 0.67
USP54Q70EL1 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC19.23■□□□□ 0.67
USP54Q70EL1 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC19.23■□□□□ 0.67
USP54Q70EL1 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC19.23■□□□□ 0.67
USP54Q70EL1 MIR4472-1-201ENST00000584349 80 ntBASIC19.23■□□□□ 0.67
USP54Q70EL1 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC19.23■□□□□ 0.67
USP54Q70EL1 HPX-213ENST00000615166 826 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 KRT8P18-201ENST00000413425 1445 ntBASIC19.23■□□□□ 0.67
USP54Q70EL1 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP54Q70EL1 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP54Q70EL1 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC19.22■□□□□ 0.67
USP54Q70EL1 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
USP54Q70EL1 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
USP54Q70EL1 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP54Q70EL1 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
USP54Q70EL1 RN7SL23P-201ENST00000484055 275 ntBASIC19.22■□□□□ 0.67
USP54Q70EL1 AL157792.1-201ENST00000488281 530 ntBASIC19.22■□□□□ 0.67
USP54Q70EL1 MT2A-202ENST00000561491 581 ntTSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC19.22■□□□□ 0.67
USP54Q70EL1 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC19.22■□□□□ 0.67
USP54Q70EL1 AL021707.6-201ENST00000609212 491 ntBASIC19.22■□□□□ 0.67
USP54Q70EL1 AC010976.2-201ENST00000609697 852 ntBASIC19.22■□□□□ 0.67
USP54Q70EL1 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP54Q70EL1 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
USP54Q70EL1 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.22■□□□□ 0.67
USP54Q70EL1 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.22■□□□□ 0.67
USP54Q70EL1 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP54Q70EL1 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP54Q70EL1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.22■□□□□ 0.67
USP54Q70EL1 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 HPD-204ENST00000543163 1709 ntTSL 5 BASIC19.21■□□□□ 0.67
USP54Q70EL1 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC19.21■□□□□ 0.67
USP54Q70EL1 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC19.21■□□□□ 0.67
USP54Q70EL1 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 PGAM1P12-201ENST00000505622 748 ntBASIC19.21■□□□□ 0.67
USP54Q70EL1 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC19.21■□□□□ 0.67
USP54Q70EL1 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 TRMT112P3-201ENST00000580149 358 ntBASIC19.21■□□□□ 0.67
USP54Q70EL1 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 AC244250.3-201ENST00000620749 366 ntBASIC19.21■□□□□ 0.67
USP54Q70EL1 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
USP54Q70EL1 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 WARS-203ENST00000358655 2466 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC19.21■□□□□ 0.67
USP54Q70EL1 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP54Q70EL1 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
USP54Q70EL1 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.21■□□□□ 0.67
USP54Q70EL1 RN7SL818P-201ENST00000485099 259 ntBASIC19.2■□□□□ 0.66
USP54Q70EL1 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC19.2■□□□□ 0.66
USP54Q70EL1 RN7SL725P-201ENST00000606439 259 ntBASIC19.2■□□□□ 0.66
USP54Q70EL1 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
USP54Q70EL1 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.2■□□□□ 0.66
USP54Q70EL1 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 AC126177.1-201ENST00000547829 2218 ntBASIC19.2■□□□□ 0.66
USP54Q70EL1 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP54Q70EL1 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms