Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
CDX1P47902 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 SPDYE19P-201ENST00000338590 713 ntBASIC12.34□□□□□ -0.43
CDX1P47902 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC12.34□□□□□ -0.43
CDX1P47902 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 PHKG1P2-201ENST00000457537 863 ntBASIC12.34□□□□□ -0.43
CDX1P47902 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.34□□□□□ -0.43
CDX1P47902 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 AC092337.1-201ENST00000568699 1129 ntBASIC12.34□□□□□ -0.43
CDX1P47902 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.34□□□□□ -0.43
CDX1P47902 AL132655.2-201ENST00000596276 594 ntBASIC12.34□□□□□ -0.43
CDX1P47902 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC12.34□□□□□ -0.43
CDX1P47902 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 AF228730.6-201ENST00000641497 218 ntBASIC12.34□□□□□ -0.43
CDX1P47902 AC084121.3-201ENST00000641716 218 ntBASIC12.34□□□□□ -0.43
CDX1P47902 AC105233.6-201ENST00000642093 218 ntBASIC12.34□□□□□ -0.43
CDX1P47902 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 AC092127.1-201ENST00000567093 3455 ntBASIC12.34□□□□□ -0.43
CDX1P47902 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.34□□□□□ -0.43
CDX1P47902 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CDX1P47902 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CDX1P47902 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CDX1P47902 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.43
CDX1P47902 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CDX1P47902 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CDX1P47902 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CDX1P47902 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.33□□□□□ -0.44
CDX1P47902 COPE-202ENST00000349893 948 ntTSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 AZGP1P1-201ENST00000411909 902 ntBASIC12.33□□□□□ -0.44
CDX1P47902 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC12.33□□□□□ -0.44
CDX1P47902 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.33□□□□□ -0.44
CDX1P47902 AL450472.2-201ENST00000603663 1156 ntBASIC12.33□□□□□ -0.44
CDX1P47902 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC12.33□□□□□ -0.44
CDX1P47902 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.33□□□□□ -0.44
CDX1P47902 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms