Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 MTHFR-210ENST00000641407 2387 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
HNF4AP41235 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 AC098614.1-201ENST00000368528 745 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 KLF2P2-201ENST00000416807 1039 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.58□□□□□ -0.08
HNF4AP41235 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.58□□□□□ -0.08
HNF4AP41235 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 INE1-201ENST00000456273 945 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.58□□□□□ -0.08
HNF4AP41235 CLUHP6-201ENST00000580789 941 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.58□□□□□ -0.08
HNF4AP41235 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 AC105233.6-201ENST00000642093 218 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HNF4AP41235 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.58□□□□□ -0.08
HNF4AP41235 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HNF4AP41235 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HNF4AP41235 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
HNF4AP41235 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.57□□□□□ -0.08
HNF4AP41235 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.57□□□□□ -0.08
HNF4AP41235 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
HNF4AP41235 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.57□□□□□ -0.08
HNF4AP41235 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
HNF4AP41235 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.57□□□□□ -0.08
HNF4AP41235 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 GIMAP3P-201ENST00000495150 836 ntBASIC14.57□□□□□ -0.08
HNF4AP41235 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.57□□□□□ -0.08
HNF4AP41235 AC010319.3-201ENST00000597028 470 ntBASIC14.57□□□□□ -0.08
HNF4AP41235 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.57□□□□□ -0.08
HNF4AP41235 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 MSTO2P-201ENST00000314835 1709 ntBASIC14.57□□□□□ -0.08
HNF4AP41235 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.57□□□□□ -0.08
HNF4AP41235 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.57□□□□□ -0.08
HNF4AP41235 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HNF4AP41235 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms