Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC113347.2-201ENST00000512350 279 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 AC004801.1-201ENST00000549557 360 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC17.1■□□□□ 0.33
SCN4AP35499 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC17.1■□□□□ 0.33
SCN4AP35499 AL353622.2-201ENST00000605846 425 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 DOC2GP-204ENST00000639052 2548 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.09■□□□□ 0.33
SCN4AP35499 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
SCN4AP35499 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
SCN4AP35499 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SCN4AP35499 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SCN4AP35499 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SCN4AP35499 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN4AP35499 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SCN4AP35499 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 MROH4P-201ENST00000431302 1578 ntBASIC17.09■□□□□ 0.33
SCN4AP35499 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN4AP35499 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SCN4AP35499 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC17.09■□□□□ 0.33
SCN4AP35499 KRT8P30-201ENST00000432100 650 ntBASIC17.09■□□□□ 0.33
SCN4AP35499 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.09■□□□□ 0.33
SCN4AP35499 SEPHS2P1-201ENST00000511618 1162 ntBASIC17.09■□□□□ 0.33
SCN4AP35499 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SCN4AP35499 CMC2-204ENST00000562713 573 ntTSL 3 BASIC17.09■□□□□ 0.33
SCN4AP35499 CMC2-209ENST00000565108 399 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN4AP35499 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC17.09■□□□□ 0.33
SCN4AP35499 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 LINC01101-201ENST00000622953 1884 ntBASIC17.09■□□□□ 0.33
SCN4AP35499 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
SCN4AP35499 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN4AP35499 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 ODCP-201ENST00000459650 1639 ntBASIC17.09■□□□□ 0.33
SCN4AP35499 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN4AP35499 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.09■□□□□ 0.33
SCN4AP35499 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SCN4AP35499 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.08■□□□□ 0.33
SCN4AP35499 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SCN4AP35499 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SCN4AP35499 AP000354.1-201ENST00000396982 456 ntBASIC17.08■□□□□ 0.33
SCN4AP35499 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.08■□□□□ 0.33
SCN4AP35499 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC17.08■□□□□ 0.33
SCN4AP35499 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SCN4AP35499 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC17.08■□□□□ 0.33
SCN4AP35499 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC17.08■□□□□ 0.33
SCN4AP35499 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC17.08■□□□□ 0.33
SCN4AP35499 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SCN4AP35499 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SCN4AP35499 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SCN4AP35499 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.08■□□□□ 0.32
SCN4AP35499 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.08■□□□□ 0.32
SCN4AP35499 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 AC138761.6-201ENST00000583997 1423 ntBASIC17.08■□□□□ 0.32
SCN4AP35499 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SCN4AP35499 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.08■□□□□ 0.32
SCN4AP35499 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
SCN4AP35499 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SCN4AP35499 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SCN4AP35499 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC17.07■□□□□ 0.32
SCN4AP35499 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.07■□□□□ 0.32
SCN4AP35499 IGKV1OR-2-201ENST00000457995 350 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SCN4AP35499 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SCN4AP35499 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.07■□□□□ 0.32
SCN4AP35499 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 CYP2T1P-202ENST00000641596 2535 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC17.07■□□□□ 0.32
SCN4AP35499 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.07■□□□□ 0.32
SCN4AP35499 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.07■□□□□ 0.32
SCN4AP35499 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.07■□□□□ 0.32
SCN4AP35499 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC17.07■□□□□ 0.32
SCN4AP35499 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms