Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 AC113367.3-201ENST00000508316 1912 ntBASIC17.04■□□□□ 0.32
SMARCA1P28370 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.04■□□□□ 0.32
SMARCA1P28370 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SMARCA1P28370 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SMARCA1P28370 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SMARCA1P28370 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SMARCA1P28370 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.04■□□□□ 0.32
SMARCA1P28370 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.04■□□□□ 0.32
SMARCA1P28370 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.04■□□□□ 0.32
SMARCA1P28370 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.04■□□□□ 0.32
SMARCA1P28370 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.04■□□□□ 0.32
SMARCA1P28370 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SMARCA1P28370 AC126915.1-201ENST00000522847 1038 ntBASIC17.04■□□□□ 0.32
SMARCA1P28370 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.04■□□□□ 0.32
SMARCA1P28370 BNIP3P13-201ENST00000599968 566 ntBASIC17.04■□□□□ 0.32
SMARCA1P28370 MIR6720-201ENST00000611664 98 ntBASIC17.04■□□□□ 0.32
SMARCA1P28370 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
SMARCA1P28370 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 AC015688.4-201ENST00000580780 1647 ntBASIC17.03■□□□□ 0.32
SMARCA1P28370 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
SMARCA1P28370 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.03■□□□□ 0.32
SMARCA1P28370 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.03■□□□□ 0.32
SMARCA1P28370 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.03■□□□□ 0.32
SMARCA1P28370 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 AL645933.1-201ENST00000440087 609 ntBASIC17.03■□□□□ 0.32
SMARCA1P28370 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.03■□□□□ 0.32
SMARCA1P28370 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.03■□□□□ 0.32
SMARCA1P28370 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.03■□□□□ 0.32
SMARCA1P28370 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.03■□□□□ 0.32
SMARCA1P28370 AC005730.2-201ENST00000564549 1184 ntBASIC17.03■□□□□ 0.32
SMARCA1P28370 RN7SL219P-201ENST00000582872 296 ntBASIC17.03■□□□□ 0.32
SMARCA1P28370 AC009884.2-201ENST00000603110 324 ntBASIC17.03■□□□□ 0.32
SMARCA1P28370 AC007663.3-201ENST00000609632 465 ntBASIC17.03■□□□□ 0.32
SMARCA1P28370 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
SMARCA1P28370 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SMARCA1P28370 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
SMARCA1P28370 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.03■□□□□ 0.32
SMARCA1P28370 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMARCA1P28370 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 PKD1P5-201ENST00000532415 10291 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 DBET-201ENST00000630918 3363 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 AL008718.2-201ENST00000609206 1313 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 AC018735.1-201ENST00000437208 1502 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.02■□□□□ 0.32
SMARCA1P28370 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms