Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.95□□□□□ -0.02
MSH3P20585 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 RN7SL48P-201ENST00000579283 293 ntBASIC14.95□□□□□ -0.02
MSH3P20585 GNRHR2-203ENST00000581100 1187 ntBASIC14.95□□□□□ -0.02
MSH3P20585 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 AC132938.4-201ENST00000623835 848 ntBASIC14.95□□□□□ -0.02
MSH3P20585 AL138709.1-201ENST00000614840 1693 ntBASIC14.95□□□□□ -0.02
MSH3P20585 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 AC026748.1-201ENST00000624349 3251 ntBASIC14.95□□□□□ -0.02
MSH3P20585 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSH3P20585 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.95□□□□□ -0.02
MSH3P20585 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.95□□□□□ -0.02
MSH3P20585 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
MSH3P20585 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
MSH3P20585 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
MSH3P20585 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
MSH3P20585 U91328.1-201ENST00000437528 223 ntBASIC14.94□□□□□ -0.02
MSH3P20585 AC245100.3-201ENST00000441281 285 ntBASIC14.94□□□□□ -0.02
MSH3P20585 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
MSH3P20585 CROCCP4-201ENST00000457096 498 ntBASIC14.94□□□□□ -0.02
MSH3P20585 GPR53P-205ENST00000457298 1084 ntBASIC14.94□□□□□ -0.02
MSH3P20585 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
MSH3P20585 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.94□□□□□ -0.02
MSH3P20585 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.94□□□□□ -0.02
MSH3P20585 ENPP7P14-201ENST00000621765 1040 ntBASIC14.94□□□□□ -0.02
MSH3P20585 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.94□□□□□ -0.02
MSH3P20585 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSH3P20585 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.94□□□□□ -0.02
MSH3P20585 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
MSH3P20585 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.93□□□□□ -0.02
MSH3P20585 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 AC112492.5-201ENST00000421897 457 ntBASIC14.93□□□□□ -0.02
MSH3P20585 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.93□□□□□ -0.02
MSH3P20585 FO681548.1-201ENST00000455617 1132 ntBASIC14.93□□□□□ -0.02
MSH3P20585 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.93□□□□□ -0.02
MSH3P20585 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.93□□□□□ -0.02
MSH3P20585 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.93□□□□□ -0.02
MSH3P20585 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
MSH3P20585 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.93□□□□□ -0.02
MSH3P20585 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSH3P20585 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms