Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
SDC1P18827 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.27□□□□□ -0.13
SDC1P18827 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.27□□□□□ -0.13
SDC1P18827 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SDC1P18827 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.26□□□□□ -0.13
SDC1P18827 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SDC1P18827 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.26□□□□□ -0.13
SDC1P18827 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
SDC1P18827 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.26□□□□□ -0.13
SDC1P18827 ELK1P1-201ENST00000485699 580 ntBASIC14.26□□□□□ -0.13
SDC1P18827 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.26□□□□□ -0.13
SDC1P18827 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 CLUHP6-201ENST00000580789 941 ntBASIC14.26□□□□□ -0.13
SDC1P18827 AC138761.1-201ENST00000584393 385 ntBASIC14.26□□□□□ -0.13
SDC1P18827 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.26□□□□□ -0.13
SDC1P18827 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.26□□□□□ -0.13
SDC1P18827 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
SDC1P18827 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
SDC1P18827 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SDC1P18827 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.26□□□□□ -0.13
SDC1P18827 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDC1P18827 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
SDC1P18827 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.25□□□□□ -0.13
SDC1P18827 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.25□□□□□ -0.13
SDC1P18827 AC087499.6-201ENST00000411576 835 ntBASIC14.25□□□□□ -0.13
SDC1P18827 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.25□□□□□ -0.13
SDC1P18827 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.25□□□□□ -0.13
SDC1P18827 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.25□□□□□ -0.13
SDC1P18827 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.25□□□□□ -0.13
SDC1P18827 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.25□□□□□ -0.13
SDC1P18827 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.25□□□□□ -0.13
SDC1P18827 AC004233.3-201ENST00000607794 1269 ntBASIC14.25□□□□□ -0.13
SDC1P18827 AJ011932.1-201ENST00000621707 465 ntBASIC14.25□□□□□ -0.13
SDC1P18827 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.25□□□□□ -0.13
SDC1P18827 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
SDC1P18827 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
SDC1P18827 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDC1P18827 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms