Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 JPT2-207ENST00000565851 565 ntTSL 1 (best)15.21■□□□□ 0.031e-8■□□□□ 9.4
YBX3P16989 JPT2-210ENST00000566925 570 ntTSL 414.49□□□□□ -0.091e-8■□□□□ 9.4
YBX3P16989 JPT2-212ENST00000568376 297 ntTSL 36.15□□□□□ -1.421e-8■□□□□ 9.4
YBX3P16989 FN1-220ENST00000480024 576 ntTSL 29.11□□□□□ -0.952e-63■□□□□ 9.4
YBX3P16989 TRAP1-210ENST00000574494 547 ntTSL 216.12■□□□□ 0.171e-10■□□□□ 9.4
YBX3P16989 NT5C3B-210ENST00000481693 513 ntTSL 210.74□□□□□ -0.692e-8■□□□□ 9.4
YBX3P16989 POLD1-204ENST00000593981 873 ntTSL 527.07■■□□□ 1.923e-9■□□□□ 9.4
YBX3P16989 POLD1-208ENST00000596648 1048 ntTSL 525.99■■□□□ 1.753e-9■□□□□ 9.4
YBX3P16989 POLD1-202ENST00000593407 867 ntTSL 524.46■■□□□ 1.513e-9■□□□□ 9.4
YBX3P16989 MKI67-204ENST00000478293 654 ntTSL 521.14■□□□□ 0.975e-9■□□□□ 9.4
YBX3P16989 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.86■■■□□ 2.699e-7■□□□□ 9.4
YBX3P16989 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.59e-7■□□□□ 9.4
YBX3P16989 UBE2D2-203ENST00000398734 901 ntTSL 511.38□□□□□ -0.599e-7■□□□□ 9.4
YBX3P16989 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.443e-6■□□□□ 9.4
YBX3P16989 PIP5K1C-204ENST00000587482 1311 ntTSL 521.09■□□□□ 0.973e-6■□□□□ 9.4
YBX3P16989 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.83e-6■□□□□ 9.4
YBX3P16989 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.713e-6■□□□□ 9.4
YBX3P16989 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.283e-6■□□□□ 9.4
YBX3P16989 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.881e-8■□□□□ 9.4
YBX3P16989 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.341e-8■□□□□ 9.4
YBX3P16989 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.21e-8■□□□□ 9.4
YBX3P16989 ANPEP-201ENST00000300060 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.489e-8■□□□□ 9.4
YBX3P16989 IDH3B-203ENST00000462967 959 ntTSL 220.98■□□□□ 0.953e-7■□□□□ 9.4
YBX3P16989 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.82■□□□□ 0.63e-7■□□□□ 9.4
YBX3P16989 TPI1-204ENST00000474253 427 ntTSL 1 (best)15.37■□□□□ 0.053e-29■□□□□ 9.4
YBX3P16989 GSK3A-204ENST00000493059 761 ntTSL 216.26■□□□□ 0.197e-9■□□□□ 9.4
YBX3P16989 ATP1A1-209ENST00000491156 666 ntTSL 210□□□□□ -0.815e-33■□□□□ 9.4
YBX3P16989 COPS6-203ENST00000419210 218 ntTSL 326.08■■□□□ 1.775e-9■□□□□ 9.4
YBX3P16989 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.265e-9■□□□□ 9.4
YBX3P16989 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC22.07■■□□□ 1.125e-9■□□□□ 9.4
YBX3P16989 ECSIT-214ENST00000593231 745 ntTSL 321.18■□□□□ 0.985e-9■□□□□ 9.4
YBX3P16989 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC20.73■□□□□ 0.915e-9■□□□□ 9.4
YBX3P16989 ECSIT-208ENST00000590480 873 ntAPPRIS ALT2 TSL 520.73■□□□□ 0.915e-9■□□□□ 9.4
YBX3P16989 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.855e-9■□□□□ 9.4
YBX3P16989 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.455e-9■□□□□ 9.4
YBX3P16989 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC17.09■□□□□ 0.335e-9■□□□□ 9.4
YBX3P16989 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.055e-9■□□□□ 9.4
YBX3P16989 ECSIT-204ENST00000585318 993 ntTSL 514.84□□□□□ -0.035e-9■□□□□ 9.4
YBX3P16989 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC13.52□□□□□ -0.255e-9■□□□□ 9.4
YBX3P16989 ECSIT-213ENST00000592665 642 ntTSL 213.42□□□□□ -0.265e-9■□□□□ 9.4
YBX3P16989 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.825e-8■□□□□ 9.4
YBX3P16989 FAM136A-205ENST00000460307 2398 ntTSL 1 (best)21.59■■□□□ 1.055e-8■□□□□ 9.4
YBX3P16989 INSIG1-206ENST00000476756 1320 ntTSL 215.18■□□□□ 0.022e-11■□□□□ 9.4
YBX3P16989 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.74■■□□□ 1.236e-6■□□□□ 9.3
YBX3P16989 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.256e-6■□□□□ 9.3
YBX3P16989 UBTF-206ENST00000527034 3010 ntTSL 5 BASIC13.93□□□□□ -0.186e-6■□□□□ 9.3
YBX3P16989 PRKD3-203ENST00000443187 695 ntTSL 414.8□□□□□ -0.047e-8■□□□□ 9.3
YBX3P16989 PRKD3-206ENST00000464552 436 ntTSL 27.04□□□□□ -1.287e-8■□□□□ 9.3
YBX3P16989 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.613e-8■□□□□ 9.3
YBX3P16989 KRT19-204ENST00000468880 868 ntTSL 221.17■□□□□ 0.983e-8■□□□□ 9.3
YBX3P16989 GLUL-206ENST00000462444 793 ntTSL 212.46□□□□□ -0.415e-12■□□□□ 9.3
YBX3P16989 NMT1-207ENST00000588455 585 ntTSL 215.07■□□□□ 01e-8■□□□□ 9.3
YBX3P16989 MAP4-214ENST00000482752 386 ntTSL 33.86□□□□□ -1.791e-8■□□□□ 9.3
YBX3P16989 MKRN1-206ENST00000471104 1053 ntTSL 524.94■■□□□ 1.582e-6■□□□□ 9.3
YBX3P16989 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.56■■□□□ 1.362e-6■□□□□ 9.3
YBX3P16989 MKRN1-211ENST00000480552 906 ntTSL 5 BASIC14.06□□□□□ -0.162e-6■□□□□ 9.3
YBX3P16989 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.416e-6■□□□□ 9.3
YBX3P16989 CFB-271ENST00000425368 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.458e-7■□□□□ 9.3
YBX3P16989 AL645922.1-202ENST00000477310 3377 ntTSL 5 BASIC11.16□□□□□ -0.628e-7■□□□□ 9.3
YBX3P16989 AL645922.1-201ENST00000456570 3874 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.748e-7■□□□□ 9.3
YBX3P16989 CFB-277ENST00000467360 1082 ntTSL 59.71□□□□□ -0.868e-7■□□□□ 9.3
YBX3P16989 CFB-282ENST00000483004 940 ntTSL 59.54□□□□□ -0.888e-7■□□□□ 9.3
YBX3P16989 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.24■□□□□ 0.835e-10■□□□□ 9.3
YBX3P16989 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.53■□□□□ 0.725e-10■□□□□ 9.3
YBX3P16989 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.55e-10■□□□□ 9.3
YBX3P16989 NDUFS2-204ENST00000467295 1060 ntTSL 328.44■■■□□ 2.145e-10■□□□□ 9.3
YBX3P16989 NDUFS2-215ENST00000496553 888 ntTSL 228.44■■■□□ 2.145e-10■□□□□ 9.3
YBX3P16989 NDUFS2-208ENST00000478866 1076 ntTSL 225.25■■□□□ 1.635e-10■□□□□ 9.3
YBX3P16989 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.785e-10■□□□□ 9.3
YBX3P16989 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.665e-10■□□□□ 9.3
YBX3P16989 NDUFS2-211ENST00000483804 1062 ntTSL 515.42■□□□□ 0.065e-10■□□□□ 9.3
YBX3P16989 NDUFS2-206ENST00000473321 555 ntTSL 215.15■□□□□ 0.025e-10■□□□□ 9.3
YBX3P16989 NUP210-202ENST00000420141 3134 ntTSL 1 (best)23.18■■□□□ 1.39e-7■□□□□ 9.3
YBX3P16989 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.176e-10■□□□□ 9.3
YBX3P16989 AHCY-204ENST00000480653 2211 ntTSL 215.64■□□□□ 0.096e-10■□□□□ 9.3
YBX3P16989 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC14.9□□□□□ -0.026e-10■□□□□ 9.3
YBX3P16989 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.34e-12■□□□□ 9.3
YBX3P16989 TUBB6-209ENST00000590693 524 ntTSL 424.75■■□□□ 1.551e-7■□□□□ 9.3
YBX3P16989 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.12■□□□□ 0.811e-7■□□□□ 9.3
YBX3P16989 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC17.58■□□□□ 0.41e-7■□□□□ 9.3
YBX3P16989 TUBB6-208ENST00000590388 576 ntTSL 416.22■□□□□ 0.191e-7■□□□□ 9.3
YBX3P16989 POLD2-206ENST00000436844 854 ntTSL 524.4■■□□□ 1.51e-7■□□□□ 9.3
YBX3P16989 EIF3D-202ENST00000402116 581 ntTSL 314.55□□□□□ -0.083e-13■□□□□ 9.3
YBX3P16989 UBA1-206ENST00000442035 1054 ntTSL 528.17■■■□□ 2.12e-7■□□□□ 9.3
YBX3P16989 UBA1-204ENST00000412206 1148 ntTSL 518.62■□□□□ 0.572e-7■□□□□ 9.3
YBX3P16989 OXSR1-202ENST00000426620 1581 ntTSL 1 (best)27.58■■■□□ 2.011e-6■□□□□ 9.3
YBX3P16989 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.5■■□□□ 1.671e-6■□□□□ 9.3
YBX3P16989 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.773e-7■□□□□ 9.3
YBX3P16989 SLC2A4RG-207ENST00000493772 1328 ntTSL 1 (best)27.78■■■□□ 2.043e-7■□□□□ 9.3
YBX3P16989 SLC2A4RG-202ENST00000473157 991 ntTSL 324.8■■□□□ 1.563e-7■□□□□ 9.3
YBX3P16989 MCM5-203ENST00000416905 739 ntTSL 317.84■□□□□ 0.452e-15■□□□□ 9.3
YBX3P16989 MCM5-205ENST00000444778 551 ntTSL 511.08□□□□□ -0.642e-15■□□□□ 9.3
YBX3P16989 MCM5-204ENST00000417343 557 ntTSL 57.42□□□□□ -1.222e-15■□□□□ 9.3
YBX3P16989 FDFT1-213ENST00000528729 570 ntTSL 38.1□□□□□ -1.118e-19■□□□□ 9.3
YBX3P16989 FDFT1-216ENST00000529521 418 ntTSL 23.52□□□□□ -1.858e-19■□□□□ 9.3
YBX3P16989 ETFA-210ENST00000559973 804 ntTSL 39.18□□□□□ -0.941e-9■□□□□ 9.3
YBX3P16989 RPS6KB2-208ENST00000526268 787 ntTSL 325.39■■□□□ 1.663e-7■□□□□ 9.3
YBX3P16989 DYNC1H1-211ENST00000556791 938 ntTSL 312.59□□□□□ -0.394e-7■□□□□ 9.3
YBX3P16989 EIF4A2-222ENST00000492144 993 ntTSL 27.04□□□□□ -1.282e-14■□□□□ 9.3
YBX3P16989 FTH1-209ENST00000533138 885 ntTSL 515.17■□□□□ 0.025e-63■□□□□ 9.3
Retrieved 100 of 29,075 protein–RNA pairs in 123.4 ms