Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC11.65□□□□□ -0.55
CXCL1P09341 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC11.65□□□□□ -0.55
CXCL1P09341 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
CXCL1P09341 GOLGA8IP-202ENST00000611635 2100 ntBASIC11.65□□□□□ -0.55
CXCL1P09341 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CXCL1P09341 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.55
CXCL1P09341 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
CXCL1P09341 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC11.64□□□□□ -0.55
CXCL1P09341 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC11.64□□□□□ -0.55
CXCL1P09341 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.64□□□□□ -0.55
CXCL1P09341 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 KRT18P67-201ENST00000432816 1264 ntBASIC11.64□□□□□ -0.55
CXCL1P09341 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 HCG4B-203ENST00000450128 991 ntBASIC11.64□□□□□ -0.55
CXCL1P09341 RNF146-204ENST00000476956 884 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 NMU-203ENST00000507338 658 ntTSL 3 BASIC11.64□□□□□ -0.55
CXCL1P09341 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC11.64□□□□□ -0.55
CXCL1P09341 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.64□□□□□ -0.55
CXCL1P09341 TOLLIP-AS1-201ENST00000530897 939 ntBASIC11.64□□□□□ -0.55
CXCL1P09341 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC11.64□□□□□ -0.55
CXCL1P09341 AC012640.2-201ENST00000561606 901 ntBASIC11.64□□□□□ -0.55
CXCL1P09341 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 AC023141.13-201ENST00000604991 943 ntBASIC11.64□□□□□ -0.55
CXCL1P09341 SPTSSB-204ENST00000617024 1292 ntBASIC11.64□□□□□ -0.55
CXCL1P09341 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CXCL1P09341 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CXCL1P09341 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CXCL1P09341 AC020910.6-201ENST00000623084 1459 ntBASIC11.63□□□□□ -0.55
CXCL1P09341 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC11.63□□□□□ -0.55
CXCL1P09341 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CXCL1P09341 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.63□□□□□ -0.55
CXCL1P09341 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC11.63□□□□□ -0.55
CXCL1P09341 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms