Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHRNA1P02708 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHRNA1P02708 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.12■□□□□ 0.17
CHRNA1P02708 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.12■□□□□ 0.17
CHRNA1P02708 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHRNA1P02708 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHRNA1P02708 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHRNA1P02708 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CHRNA1P02708 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
CHRNA1P02708 LINC01165-201ENST00000445190 1623 ntBASIC16.12■□□□□ 0.17
CHRNA1P02708 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
CHRNA1P02708 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.12■□□□□ 0.17
CHRNA1P02708 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.11■□□□□ 0.17
CHRNA1P02708 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.11■□□□□ 0.17
CHRNA1P02708 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CHRNA1P02708 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 KRT18P36-201ENST00000411618 1276 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.11■□□□□ 0.17
CHRNA1P02708 AC026320.2-201ENST00000434379 478 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 NOC2LP1-201ENST00000450578 752 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 RN7SL67P-201ENST00000492147 296 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.11■□□□□ 0.17
CHRNA1P02708 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.11■□□□□ 0.17
CHRNA1P02708 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.11■□□□□ 0.17
CHRNA1P02708 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.11■□□□□ 0.17
CHRNA1P02708 AC092299.1-201ENST00000632679 757 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 CICP23-201ENST00000605013 2741 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CHRNA1P02708 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.11■□□□□ 0.17
CHRNA1P02708 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 ACE3P-201ENST00000423435 1973 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 FAM90A2P-201ENST00000511144 1395 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 FAM90A25P-201ENST00000528404 1395 ntBASIC16.11■□□□□ 0.17
CHRNA1P02708 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.11■□□□□ 0.17
CHRNA1P02708 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHRNA1P02708 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CHRNA1P02708 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 AC015909.3-201ENST00000572855 1794 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHRNA1P02708 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.1■□□□□ 0.17
CHRNA1P02708 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC16.1■□□□□ 0.17
CHRNA1P02708 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.1■□□□□ 0.17
CHRNA1P02708 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.1■□□□□ 0.17
CHRNA1P02708 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.1■□□□□ 0.17
CHRNA1P02708 AC008723.1-201ENST00000506922 207 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.1■□□□□ 0.17
CHRNA1P02708 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC16.1■□□□□ 0.17
CHRNA1P02708 AC051619.9-201ENST00000623237 597 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms