Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.66□□□□□ -0.06
SIX3O95343 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SIX3O95343 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.66□□□□□ -0.06
SIX3O95343 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.66□□□□□ -0.06
SIX3O95343 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SIX3O95343 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SIX3O95343 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SIX3O95343 KLF2P2-201ENST00000416807 1039 ntBASIC14.66□□□□□ -0.06
SIX3O95343 EIF3FP3-201ENST00000434851 1086 ntBASIC14.66□□□□□ -0.06
SIX3O95343 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.66□□□□□ -0.06
SIX3O95343 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.66□□□□□ -0.06
SIX3O95343 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.66□□□□□ -0.06
SIX3O95343 RNA5SP421-201ENST00000516864 134 ntBASIC14.66□□□□□ -0.06
SIX3O95343 AC022616.1-201ENST00000518688 554 ntBASIC14.66□□□□□ -0.06
SIX3O95343 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.66□□□□□ -0.06
SIX3O95343 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.66□□□□□ -0.06
SIX3O95343 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.66□□□□□ -0.06
SIX3O95343 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.66□□□□□ -0.06
SIX3O95343 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.66□□□□□ -0.06
SIX3O95343 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.66□□□□□ -0.06
SIX3O95343 CHCHD2P3-201ENST00000603038 451 ntBASIC14.66□□□□□ -0.06
SIX3O95343 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.66□□□□□ -0.06
SIX3O95343 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
SIX3O95343 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SIX3O95343 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.65□□□□□ -0.06
SIX3O95343 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 SOCS2P1-201ENST00000417727 557 ntBASIC14.65□□□□□ -0.06
SIX3O95343 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 AL132655.2-201ENST00000596276 594 ntBASIC14.65□□□□□ -0.06
SIX3O95343 AC009118.2-201ENST00000613275 655 ntBASIC14.65□□□□□ -0.06
SIX3O95343 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SIX3O95343 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
SIX3O95343 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SIX3O95343 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms