Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNF40O75150 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
RNF40O75150 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
RNF40O75150 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RNF40O75150 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF40O75150 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF40O75150 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.29■□□□□ 0.2
RNF40O75150 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
RNF40O75150 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF40O75150 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RNF40O75150 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.28■□□□□ 0.2
RNF40O75150 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.28■□□□□ 0.2
RNF40O75150 AC134407.2-201ENST00000625089 1978 ntBASIC16.28■□□□□ 0.2
RNF40O75150 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.28■□□□□ 0.2
RNF40O75150 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.28■□□□□ 0.2
RNF40O75150 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.28■□□□□ 0.2
RNF40O75150 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.28■□□□□ 0.2
RNF40O75150 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RNF40O75150 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RNF40O75150 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.28■□□□□ 0.2
RNF40O75150 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.28■□□□□ 0.2
RNF40O75150 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF40O75150 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC16.27■□□□□ 0.2
RNF40O75150 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 AC092135.3-201ENST00000624151 1846 ntBASIC16.27■□□□□ 0.2
RNF40O75150 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
RNF40O75150 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.27■□□□□ 0.2
RNF40O75150 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.27■□□□□ 0.2
RNF40O75150 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.27■□□□□ 0.2
RNF40O75150 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.27■□□□□ 0.2
RNF40O75150 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.27■□□□□ 0.2
RNF40O75150 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.27■□□□□ 0.2
RNF40O75150 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC16.27■□□□□ 0.2
RNF40O75150 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
RNF40O75150 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.27■□□□□ 0.2
RNF40O75150 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.27■□□□□ 0.2
RNF40O75150 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.27■□□□□ 0.2
RNF40O75150 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
RNF40O75150 LINC01115-203ENST00000606068 577 ntBASIC16.27■□□□□ 0.2
RNF40O75150 AC103798.2-201ENST00000624292 632 ntBASIC16.27■□□□□ 0.2
RNF40O75150 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 COL6A4P2-202ENST00000504443 2753 ntBASIC16.27■□□□□ 0.2
RNF40O75150 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
RNF40O75150 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF40O75150 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
RNF40O75150 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
RNF40O75150 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.27■□□□□ 0.19
RNF40O75150 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RNF40O75150 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RNF40O75150 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.27■□□□□ 0.19
RNF40O75150 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms