Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ZIC3O60481 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.42□□□□□ -0.26
ZIC3O60481 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ZIC3O60481 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ZIC3O60481 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ZIC3O60481 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 AC068418.2-201ENST00000577309 3703 ntBASIC13.41□□□□□ -0.26
ZIC3O60481 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 AL354877.1-201ENST00000424412 413 ntBASIC13.41□□□□□ -0.26
ZIC3O60481 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.41□□□□□ -0.26
ZIC3O60481 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 DUX4L46-201ENST00000566845 751 ntBASIC13.41□□□□□ -0.26
ZIC3O60481 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.41□□□□□ -0.26
ZIC3O60481 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.41□□□□□ -0.26
ZIC3O60481 AC005695.3-201ENST00000614522 232 ntBASIC13.41□□□□□ -0.26
ZIC3O60481 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.41□□□□□ -0.26
ZIC3O60481 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 AL136172.1-201ENST00000598590 1394 ntBASIC13.41□□□□□ -0.26
ZIC3O60481 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.41□□□□□ -0.26
ZIC3O60481 AC092135.3-201ENST00000624151 1846 ntBASIC13.41□□□□□ -0.26
ZIC3O60481 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.41□□□□□ -0.26
ZIC3O60481 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ZIC3O60481 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.41□□□□□ -0.26
ZIC3O60481 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
ZIC3O60481 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
ZIC3O60481 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.4□□□□□ -0.26
ZIC3O60481 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.4□□□□□ -0.26
ZIC3O60481 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.4□□□□□ -0.26
ZIC3O60481 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.4□□□□□ -0.26
ZIC3O60481 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.4□□□□□ -0.26
ZIC3O60481 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.4□□□□□ -0.26
ZIC3O60481 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 AC009955.4-201ENST00000597192 544 ntBASIC13.4□□□□□ -0.26
ZIC3O60481 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 MTHFR-210ENST00000641407 2387 ntBASIC13.4□□□□□ -0.26
ZIC3O60481 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ZIC3O60481 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.4□□□□□ -0.26
ZIC3O60481 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms