Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 KRT18P35-201ENST00000510488 1269 ntBASIC11.01□□□□□ -0.65
SMKR1H3BMG3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 AC112191.1-201ENST00000523689 701 ntBASIC11.01□□□□□ -0.65
SMKR1H3BMG3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 AC015910.1-201ENST00000579400 975 ntBASIC11.01□□□□□ -0.65
SMKR1H3BMG3 AC025181.2-201ENST00000606994 802 ntBASIC11.01□□□□□ -0.65
SMKR1H3BMG3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 SLC6A6P1-201ENST00000413933 1850 ntBASIC11.01□□□□□ -0.65
SMKR1H3BMG3 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 PCDHA5-203ENST00000614258 4248 ntBASIC11.01□□□□□ -0.65
SMKR1H3BMG3 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SMKR1H3BMG3 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 INE2-201ENST00000630399 1874 ntBASIC11□□□□□ -0.65
SMKR1H3BMG3 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC11□□□□□ -0.65
SMKR1H3BMG3 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC11□□□□□ -0.65
SMKR1H3BMG3 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
SMKR1H3BMG3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 TFAMP1-201ENST00000412727 736 ntBASIC11□□□□□ -0.65
SMKR1H3BMG3 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
SMKR1H3BMG3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC11□□□□□ -0.65
SMKR1H3BMG3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC11□□□□□ -0.65
SMKR1H3BMG3 AC083964.2-201ENST00000623988 2396 ntBASIC11□□□□□ -0.65
SMKR1H3BMG3 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC11□□□□□ -0.65
SMKR1H3BMG3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 AC090505.1-201ENST00000430515 1834 ntBASIC11□□□□□ -0.65
SMKR1H3BMG3 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11□□□□□ -0.65
SMKR1H3BMG3 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11□□□□□ -0.65
SMKR1H3BMG3 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.65
SMKR1H3BMG3 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SMKR1H3BMG3 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms