Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SIGLEC22P-201ENST00000599104 714 ntBASIC11.31□□□□□ -0.6
COL6A5A8TX70 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AC112504.1-201ENST00000623415 1841 ntBASIC11.31□□□□□ -0.6
COL6A5A8TX70 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC11.31□□□□□ -0.6
COL6A5A8TX70 MIR611-201ENST00000384869 67 ntBASIC11.31□□□□□ -0.6
COL6A5A8TX70 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 ABCC6P2-201ENST00000526069 590 ntBASIC11.31□□□□□ -0.6
COL6A5A8TX70 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AC010531.8-201ENST00000623341 685 ntBASIC11.31□□□□□ -0.6
COL6A5A8TX70 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 TREX1-203ENST00000456089 629 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 AC120498.7-201ENST00000562876 330 ntBASIC11.3□□□□□ -0.6
COL6A5A8TX70 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 AC009090.5-201ENST00000624886 2285 ntBASIC11.3□□□□□ -0.6
COL6A5A8TX70 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 TNRC18P3-201ENST00000441896 2691 ntBASIC11.3□□□□□ -0.6
COL6A5A8TX70 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 LINC00528-201ENST00000600723 2160 ntBASIC11.3□□□□□ -0.6
COL6A5A8TX70 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 OR52M2P-201ENST00000414298 959 ntBASIC11.3□□□□□ -0.6
COL6A5A8TX70 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms