Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.57□□□□□ -0.24
HIF3AQ9Y2N7 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 AC139749.1-202ENST00000617529 3139 ntBASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 TMEM261P1-201ENST00000604899 340 ntBASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIF3AQ9Y2N7 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 KLF2P2-201ENST00000416807 1039 ntBASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 GIMAP3P-201ENST00000495150 836 ntBASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.55□□□□□ -0.24
HIF3AQ9Y2N7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms