Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VTA1Q9NP79 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.6■□□□□ 0.25
VTA1Q9NP79 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.6■□□□□ 0.25
VTA1Q9NP79 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC16.6■□□□□ 0.25
VTA1Q9NP79 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VTA1Q9NP79 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VTA1Q9NP79 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 AC013726.1-201ENST00000563747 2285 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 LINC01101-201ENST00000622953 1884 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 AC026803.1-201ENST00000569130 274 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 MIR3188-201ENST00000583494 85 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 MEG3_2.1-201ENST00000611456 105 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 MIR6727-201ENST00000620702 65 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 FAM90A2P-201ENST00000511144 1395 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 FAM90A25P-201ENST00000528404 1395 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 TMBIM7P-202ENST00000641474 1516 ntBASIC16.59■□□□□ 0.25
VTA1Q9NP79 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.59■□□□□ 0.25
VTA1Q9NP79 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VTA1Q9NP79 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VTA1Q9NP79 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VTA1Q9NP79 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VTA1Q9NP79 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.25
VTA1Q9NP79 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.58■□□□□ 0.25
VTA1Q9NP79 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VTA1Q9NP79 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.25
VTA1Q9NP79 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VTA1Q9NP79 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VTA1Q9NP79 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VTA1Q9NP79 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VTA1Q9NP79 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VTA1Q9NP79 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VTA1Q9NP79 AC253536.4-201ENST00000440539 267 ntBASIC16.58■□□□□ 0.24
VTA1Q9NP79 FGFR3P1-201ENST00000449999 601 ntBASIC16.58■□□□□ 0.24
VTA1Q9NP79 NOC2LP1-201ENST00000450578 752 ntBASIC16.58■□□□□ 0.24
VTA1Q9NP79 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VTA1Q9NP79 AC008267.1-201ENST00000474858 1069 ntBASIC16.58■□□□□ 0.24
VTA1Q9NP79 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VTA1Q9NP79 RN7SL67P-201ENST00000492147 296 ntBASIC16.58■□□□□ 0.24
VTA1Q9NP79 PARP8-206ENST00000503665 572 ntTSL 4 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VTA1Q9NP79 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.58■□□□□ 0.24
VTA1Q9NP79 MIR5572-201ENST00000583188 137 ntBASIC16.58■□□□□ 0.24
VTA1Q9NP79 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms