Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 CSF2RBP1-201ENST00000447905 391 ntBASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AL590640.2-201ENST00000457038 527 ntBASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 ECM1P1-201ENST00000604092 1279 ntBASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AC008687.7-202ENST00000637404 953 ntBASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AGAP7P-201ENST00000582299 2062 ntBASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 AGAP14-201ENST00000624701 2060 ntBASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 HLA-V-201ENST00000429037 534 ntBASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 AC026954.1-201ENST00000429771 1293 ntBASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 AC023310.1-201ENST00000554836 735 ntBASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 AHCYP2-201ENST00000430630 1300 ntBASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRIM39Q9HCM9 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms