Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 ABR-205ENST00000544583 5595 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 AL360270.3-201ENST00000609118 1348 ntBASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 LILRP1-201ENST00000444199 1370 ntBASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 KLF2P2-201ENST00000416807 1039 ntBASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 AC026954.1-201ENST00000429771 1293 ntBASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 AL033527.4-201ENST00000641026 673 ntBASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.93■□□□□ 0.46
CHMP4CQ96CF2 CICP24-201ENST00000605464 2705 ntBASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 FAM197Y7-201ENST00000432892 766 ntBASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 AC016694.1-201ENST00000434179 700 ntBASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 AC022137.2-201ENST00000503482 481 ntBASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 KRT8P35-201ENST00000483942 1338 ntBASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CHMP4CQ96CF2 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms