Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TDH-203ENST00000531764 1110 ntBASIC13.34□□□□□ -0.27
SKA3Q8IX90 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.34□□□□□ -0.27
SKA3Q8IX90 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SKA3Q8IX90 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
SKA3Q8IX90 MSTO2P-201ENST00000314835 1709 ntBASIC13.33□□□□□ -0.27
SKA3Q8IX90 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
SKA3Q8IX90 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SKA3Q8IX90 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 KRT8P14-201ENST00000414254 1442 ntBASIC13.33□□□□□ -0.28
SKA3Q8IX90 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.33□□□□□ -0.28
SKA3Q8IX90 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 AC132938.2-201ENST00000579188 680 ntBASIC13.33□□□□□ -0.28
SKA3Q8IX90 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 AL591163.1-201ENST00000641757 987 ntBASIC13.33□□□□□ -0.28
SKA3Q8IX90 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SKA3Q8IX90 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
SKA3Q8IX90 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 CU639417.3-201ENST00000624240 1404 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms