Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
RNF43Q68DV7 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.77■□□□□ 0.12
RNF43Q68DV7 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
RNF43Q68DV7 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
RNF43Q68DV7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
RNF43Q68DV7 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF43Q68DV7 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.77■□□□□ 0.11
RNF43Q68DV7 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF43Q68DV7 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 RNU1-114P-201ENST00000365297 166 ntBASIC15.76■□□□□ 0.11
RNF43Q68DV7 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 KLF2P2-201ENST00000416807 1039 ntBASIC15.76■□□□□ 0.11
RNF43Q68DV7 AC114812.1-204ENST00000449669 728 ntBASIC15.76■□□□□ 0.11
RNF43Q68DV7 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 FTH1P14-201ENST00000482930 551 ntBASIC15.76■□□□□ 0.11
RNF43Q68DV7 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 BEND3P1-201ENST00000421591 1944 ntBASIC15.76■□□□□ 0.11
RNF43Q68DV7 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF43Q68DV7 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RNF43Q68DV7 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 AL139094.1-201ENST00000405549 1188 ntBASIC15.75■□□□□ 0.11
RNF43Q68DV7 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 GHSR-202ENST00000427970 912 ntBASIC15.75■□□□□ 0.11
RNF43Q68DV7 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 KRT8P13-201ENST00000463294 1010 ntBASIC15.75■□□□□ 0.11
RNF43Q68DV7 AC004066.1-201ENST00000502488 802 ntBASIC15.75■□□□□ 0.11
RNF43Q68DV7 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 SAMD11P1-201ENST00000571429 661 ntBASIC15.75■□□□□ 0.11
RNF43Q68DV7 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 AC091271.1-201ENST00000611877 1162 ntBASIC15.75■□□□□ 0.11
RNF43Q68DV7 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.75■□□□□ 0.11
RNF43Q68DV7 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF43Q68DV7 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms