Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
RNF4P78317 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
RNF4P78317 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
RNF4P78317 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
RNF4P78317 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.89□□□□□ -0.19
RNF4P78317 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.89□□□□□ -0.19
RNF4P78317 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.89□□□□□ -0.19
RNF4P78317 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.89□□□□□ -0.19
RNF4P78317 TLE1P1-201ENST00000422965 589 ntBASIC13.89□□□□□ -0.19
RNF4P78317 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.89□□□□□ -0.19
RNF4P78317 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.89□□□□□ -0.19
RNF4P78317 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.89□□□□□ -0.19
RNF4P78317 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 AP003171.2-201ENST00000528208 925 ntBASIC13.89□□□□□ -0.19
RNF4P78317 AC073413.1-201ENST00000603927 732 ntBASIC13.89□□□□□ -0.19
RNF4P78317 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 AC138696.2-201ENST00000607376 223 ntBASIC13.89□□□□□ -0.19
RNF4P78317 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.89□□□□□ -0.19
RNF4P78317 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
RNF4P78317 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.89□□□□□ -0.19
RNF4P78317 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
RNF4P78317 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RNF4P78317 AL138725.1-201ENST00000407347 1314 ntBASIC13.89□□□□□ -0.19
RNF4P78317 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 AC003102.2-201ENST00000589195 1469 ntBASIC13.88□□□□□ -0.19
RNF4P78317 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.88□□□□□ -0.19
RNF4P78317 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.88□□□□□ -0.19
RNF4P78317 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.88□□□□□ -0.19
RNF4P78317 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.88□□□□□ -0.19
RNF4P78317 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.88□□□□□ -0.19
RNF4P78317 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.88□□□□□ -0.19
RNF4P78317 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.88□□□□□ -0.19
RNF4P78317 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 ZACNP1-201ENST00000612259 710 ntBASIC13.88□□□□□ -0.19
RNF4P78317 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.88□□□□□ -0.19
RNF4P78317 AL033527.4-201ENST00000641026 673 ntBASIC13.88□□□□□ -0.19
RNF4P78317 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.88□□□□□ -0.19
RNF4P78317 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 INE2-201ENST00000630399 1874 ntBASIC13.88□□□□□ -0.19
RNF4P78317 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.88□□□□□ -0.19
RNF4P78317 AC011840.2-201ENST00000563063 1520 ntBASIC13.88□□□□□ -0.19
RNF4P78317 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 AJ011931.1-201ENST00000618749 2492 ntBASIC13.88□□□□□ -0.19
RNF4P78317 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms