Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC007967.2-201ENST00000432613 625 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.35□□□□□ -0.43
NKX2-1P43699 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.35□□□□□ -0.43
NKX2-1P43699 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 AC243562.1-201ENST00000560672 389 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.35□□□□□ -0.43
NKX2-1P43699 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 AC027601.4-201ENST00000611259 610 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 FAM197Y3-203ENST00000618346 717 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 AL513190.1-201ENST00000621254 727 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 INE2-201ENST00000630399 1874 ntBASIC12.34□□□□□ -0.43
NKX2-1P43699 PPT1-213ENST00000641319 2388 ntBASIC12.34□□□□□ -0.43
NKX2-1P43699 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
NKX2-1P43699 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 TEX30-205ENST00000376029 959 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 SPDYE17-201ENST00000412399 783 ntBASIC12.34□□□□□ -0.43
NKX2-1P43699 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC12.34□□□□□ -0.43
NKX2-1P43699 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC12.34□□□□□ -0.43
NKX2-1P43699 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC12.34□□□□□ -0.43
NKX2-1P43699 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.34□□□□□ -0.43
NKX2-1P43699 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.34□□□□□ -0.43
NKX2-1P43699 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC12.34□□□□□ -0.43
NKX2-1P43699 LINC01225-203ENST00000563550 1244 ntBASIC12.34□□□□□ -0.43
NKX2-1P43699 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.34□□□□□ -0.43
NKX2-1P43699 AC105021.1-202ENST00000570572 669 ntBASIC12.34□□□□□ -0.43
NKX2-1P43699 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC12.34□□□□□ -0.43
NKX2-1P43699 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 AC091812.2-201ENST00000619081 385 ntBASIC12.34□□□□□ -0.43
NKX2-1P43699 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.34□□□□□ -0.43
NKX2-1P43699 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
NKX2-1P43699 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
NKX2-1P43699 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms