Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.6□□□□□ -0.07
HNF4AP41235 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.6□□□□□ -0.07
HNF4AP41235 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.6□□□□□ -0.07
HNF4AP41235 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HNF4AP41235 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.6□□□□□ -0.07
HNF4AP41235 COX20P2-201ENST00000452636 358 ntBASIC14.6□□□□□ -0.07
HNF4AP41235 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.6□□□□□ -0.07
HNF4AP41235 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
HNF4AP41235 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.6□□□□□ -0.07
HNF4AP41235 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.6□□□□□ -0.07
HNF4AP41235 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.6□□□□□ -0.07
HNF4AP41235 AC005252.2-201ENST00000624630 1141 ntBASIC14.6□□□□□ -0.07
HNF4AP41235 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.6□□□□□ -0.07
HNF4AP41235 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.6□□□□□ -0.07
HNF4AP41235 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.6□□□□□ -0.07
HNF4AP41235 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.6□□□□□ -0.07
HNF4AP41235 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.59□□□□□ -0.07
HNF4AP41235 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.59□□□□□ -0.07
HNF4AP41235 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HNF4AP41235 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HNF4AP41235 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.59□□□□□ -0.07
HNF4AP41235 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
HNF4AP41235 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HNF4AP41235 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HNF4AP41235 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.59□□□□□ -0.07
HNF4AP41235 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 RNU1-114P-201ENST00000365297 166 ntBASIC14.59□□□□□ -0.07
HNF4AP41235 ACKR1-201ENST00000368121 1240 ntBASIC14.59□□□□□ -0.07
HNF4AP41235 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.59□□□□□ -0.07
HNF4AP41235 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
HNF4AP41235 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.59□□□□□ -0.07
HNF4AP41235 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 AL162726.2-201ENST00000438986 1017 ntBASIC14.59□□□□□ -0.07
HNF4AP41235 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.59□□□□□ -0.07
HNF4AP41235 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HNF4AP41235 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.59□□□□□ -0.07
HNF4AP41235 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
HNF4AP41235 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.59□□□□□ -0.07
HNF4AP41235 AL596325.1-201ENST00000563991 1082 ntBASIC14.59□□□□□ -0.07
HNF4AP41235 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HNF4AP41235 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.59□□□□□ -0.07
HNF4AP41235 AP005019.2-201ENST00000615104 511 ntBASIC14.59□□□□□ -0.07
HNF4AP41235 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.59□□□□□ -0.07
HNF4AP41235 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HNF4AP41235 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 AC023090.2-201ENST00000625182 2110 ntBASIC14.59□□□□□ -0.07
HNF4AP41235 INTS4P1-203ENST00000641008 3683 ntBASIC14.59□□□□□ -0.07
HNF4AP41235 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HNF4AP41235 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HNF4AP41235 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.58□□□□□ -0.07
HNF4AP41235 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HNF4AP41235 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HNF4AP41235 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
HNF4AP41235 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HNF4AP41235 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 AC140479.7-201ENST00000636301 2332 ntBASIC14.58□□□□□ -0.08
HNF4AP41235 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HNF4AP41235 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms