Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC023274.1-201ENST00000418278 595 ntBASIC14.37□□□□□ -0.11
MSX2P35548 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.37□□□□□ -0.11
MSX2P35548 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.37□□□□□ -0.11
MSX2P35548 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.37□□□□□ -0.11
MSX2P35548 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.37□□□□□ -0.11
MSX2P35548 AC003101.2-201ENST00000612557 442 ntBASIC14.37□□□□□ -0.11
MSX2P35548 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
MSX2P35548 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 AL360270.3-201ENST00000609118 1348 ntBASIC14.37□□□□□ -0.11
MSX2P35548 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MSX2P35548 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.37□□□□□ -0.11
MSX2P35548 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.37□□□□□ -0.11
MSX2P35548 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
MSX2P35548 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.36□□□□□ -0.11
MSX2P35548 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.36□□□□□ -0.11
MSX2P35548 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 RNA5SP416-201ENST00000516838 111 ntBASIC14.36□□□□□ -0.11
MSX2P35548 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.36□□□□□ -0.11
MSX2P35548 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 RN7SL828P-201ENST00000607615 303 ntBASIC14.36□□□□□ -0.11
MSX2P35548 AC018529.1-201ENST00000613063 361 ntBASIC14.36□□□□□ -0.11
MSX2P35548 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
MSX2P35548 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.36□□□□□ -0.11
MSX2P35548 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.36□□□□□ -0.11
MSX2P35548 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 AC023794.5-201ENST00000564380 2157 ntBASIC14.36□□□□□ -0.11
MSX2P35548 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX2P35548 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX2P35548 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MSX2P35548 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.35□□□□□ -0.11
MSX2P35548 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
MSX2P35548 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms