Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.78□□□□□ -0.2
MSX1P28360 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
MSX1P28360 MSTO2P-201ENST00000314835 1709 ntBASIC13.78□□□□□ -0.2
MSX1P28360 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.78□□□□□ -0.2
MSX1P28360 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
MSX1P28360 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
MSX1P28360 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
MSX1P28360 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
MSX1P28360 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.77□□□□□ -0.2
MSX1P28360 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
MSX1P28360 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.77□□□□□ -0.2
MSX1P28360 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.77□□□□□ -0.2
MSX1P28360 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
MSX1P28360 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.77□□□□□ -0.21
MSX1P28360 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.77□□□□□ -0.21
MSX1P28360 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX1P28360 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.77□□□□□ -0.21
MSX1P28360 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX1P28360 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
MSX1P28360 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.77□□□□□ -0.21
MSX1P28360 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.77□□□□□ -0.21
MSX1P28360 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 KRT90P-201ENST00000549264 1064 ntBASIC13.77□□□□□ -0.21
MSX1P28360 AC025279.2-201ENST00000569730 653 ntBASIC13.77□□□□□ -0.21
MSX1P28360 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
MSX1P28360 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.77□□□□□ -0.21
MSX1P28360 RHOXF1P1-202ENST00000635473 501 ntBASIC13.77□□□□□ -0.21
MSX1P28360 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
MSX1P28360 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MSX1P28360 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX1P28360 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX1P28360 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 AL138709.1-201ENST00000614840 1693 ntBASIC13.76□□□□□ -0.21
MSX1P28360 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
MSX1P28360 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.76□□□□□ -0.21
MSX1P28360 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
MSX1P28360 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
MSX1P28360 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
MSX1P28360 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 AC106760.1-201ENST00000508690 800 ntBASIC13.76□□□□□ -0.21
MSX1P28360 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX1P28360 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX1P28360 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 AC243960.2-201ENST00000600996 747 ntBASIC13.76□□□□□ -0.21
MSX1P28360 OR13I1P-201ENST00000609811 1264 ntBASIC13.76□□□□□ -0.21
MSX1P28360 ENPP7P14-201ENST00000621765 1040 ntBASIC13.76□□□□□ -0.21
MSX1P28360 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX1P28360 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX1P28360 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms