Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.77□□□□□ -0.37
USF1P22415 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 AC092127.1-201ENST00000567093 3455 ntBASIC12.76□□□□□ -0.37
USF1P22415 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
USF1P22415 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 AL139094.1-201ENST00000405549 1188 ntBASIC12.76□□□□□ -0.37
USF1P22415 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.76□□□□□ -0.37
USF1P22415 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.76□□□□□ -0.37
USF1P22415 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC12.76□□□□□ -0.37
USF1P22415 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC12.76□□□□□ -0.37
USF1P22415 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.76□□□□□ -0.37
USF1P22415 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC12.76□□□□□ -0.37
USF1P22415 ENPP7P14-201ENST00000621765 1040 ntBASIC12.76□□□□□ -0.37
USF1P22415 PRSS30P-206ENST00000641773 873 ntBASIC12.76□□□□□ -0.37
USF1P22415 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 AL009178.2-201ENST00000597278 2719 ntBASIC12.76□□□□□ -0.37
USF1P22415 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 STK40-201ENST00000359297 4837 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.76□□□□□ -0.37
USF1P22415 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.76□□□□□ -0.37
USF1P22415 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
USF1P22415 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
USF1P22415 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 CSH2-202ENST00000345366 598 ntTSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.75□□□□□ -0.37
USF1P22415 HNRNPA1P32-201ENST00000396326 963 ntBASIC12.75□□□□□ -0.37
USF1P22415 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 AC092506.1-202ENST00000401022 528 ntBASIC12.75□□□□□ -0.37
USF1P22415 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.75□□□□□ -0.37
USF1P22415 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC12.75□□□□□ -0.37
USF1P22415 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 HLA-DPB2-205ENST00000435074 1188 ntBASIC12.75□□□□□ -0.37
USF1P22415 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms