Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SDC1P18827 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SDC1P18827 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SDC1P18827 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 ACTBP8-201ENST00000403258 1108 ntBASIC14.28□□□□□ -0.12
SDC1P18827 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.28□□□□□ -0.12
SDC1P18827 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SDC1P18827 SALL4P5-201ENST00000419001 1760 ntBASIC14.28□□□□□ -0.12
SDC1P18827 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 AC007969.1-201ENST00000433675 447 ntBASIC14.28□□□□□ -0.12
SDC1P18827 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 AL391825.1-201ENST00000457671 1364 ntBASIC14.28□□□□□ -0.12
SDC1P18827 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.28□□□□□ -0.12
SDC1P18827 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SDC1P18827 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SDC1P18827 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.28□□□□□ -0.12
SDC1P18827 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.28□□□□□ -0.12
SDC1P18827 AC007541.1-201ENST00000570282 1469 ntBASIC14.28□□□□□ -0.12
SDC1P18827 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 LRRC59-203ENST00000576448 1531 ntBASIC14.28□□□□□ -0.12
SDC1P18827 AC003102.2-201ENST00000589195 1469 ntBASIC14.28□□□□□ -0.12
SDC1P18827 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.28□□□□□ -0.12
SDC1P18827 AC133539.2-201ENST00000604757 467 ntBASIC14.28□□□□□ -0.12
SDC1P18827 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 AP005019.2-201ENST00000615104 511 ntBASIC14.28□□□□□ -0.12
SDC1P18827 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.28□□□□□ -0.12
SDC1P18827 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SDC1P18827 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SDC1P18827 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SDC1P18827 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
SDC1P18827 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.27□□□□□ -0.12
SDC1P18827 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.27□□□□□ -0.12
SDC1P18827 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.27□□□□□ -0.12
SDC1P18827 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.27□□□□□ -0.12
SDC1P18827 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
SDC1P18827 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
SDC1P18827 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SDC1P18827 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
SDC1P18827 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
SDC1P18827 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 TLE1P1-201ENST00000422965 589 ntBASIC14.27□□□□□ -0.13
SDC1P18827 MYCLP2-201ENST00000449268 967 ntBASIC14.27□□□□□ -0.13
SDC1P18827 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
SDC1P18827 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.27□□□□□ -0.13
SDC1P18827 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.27□□□□□ -0.13
SDC1P18827 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.27□□□□□ -0.13
SDC1P18827 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.27□□□□□ -0.13
SDC1P18827 AC092364.2-202ENST00000597012 1073 ntBASIC14.27□□□□□ -0.13
SDC1P18827 AC004466.1-201ENST00000599515 1080 ntBASIC14.27□□□□□ -0.13
SDC1P18827 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
SDC1P18827 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
SDC1P18827 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.27□□□□□ -0.13
SDC1P18827 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SDC1P18827 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
SDC1P18827 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDC1P18827 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.27□□□□□ -0.13
SDC1P18827 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms