Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
APOEP02649 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.76■□□□□ 0.11
APOEP02649 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.76■□□□□ 0.11
APOEP02649 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.76■□□□□ 0.11
APOEP02649 PDIA3P1-201ENST00000471856 1510 ntBASIC15.76■□□□□ 0.11
APOEP02649 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
APOEP02649 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.76■□□□□ 0.11
APOEP02649 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
APOEP02649 AL138709.1-201ENST00000614840 1693 ntBASIC15.76■□□□□ 0.11
APOEP02649 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.76■□□□□ 0.11
APOEP02649 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
APOEP02649 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.75■□□□□ 0.11
APOEP02649 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 AC055811.4-201ENST00000624039 1754 ntBASIC15.75■□□□□ 0.11
APOEP02649 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.75■□□□□ 0.11
APOEP02649 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
APOEP02649 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.75■□□□□ 0.11
APOEP02649 EIF3FP3-201ENST00000434851 1086 ntBASIC15.75■□□□□ 0.11
APOEP02649 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.75■□□□□ 0.11
APOEP02649 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 AC104989.1-201ENST00000519711 778 ntBASIC15.75■□□□□ 0.11
APOEP02649 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.75■□□□□ 0.11
APOEP02649 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.75■□□□□ 0.11
APOEP02649 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
APOEP02649 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.75■□□□□ 0.11
APOEP02649 KRT90P-201ENST00000549264 1064 ntBASIC15.75■□□□□ 0.11
APOEP02649 RN7SL48P-201ENST00000579283 293 ntBASIC15.75■□□□□ 0.11
APOEP02649 MIR6805-201ENST00000615055 62 ntBASIC15.75■□□□□ 0.11
APOEP02649 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
APOEP02649 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
APOEP02649 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
APOEP02649 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
APOEP02649 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.74■□□□□ 0.11
APOEP02649 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.74■□□□□ 0.11
APOEP02649 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
APOEP02649 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.74■□□□□ 0.11
APOEP02649 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.74■□□□□ 0.11
APOEP02649 AL137783.1-201ENST00000623494 1896 ntBASIC15.74■□□□□ 0.11
APOEP02649 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
APOEP02649 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.74■□□□□ 0.11
APOEP02649 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
APOEP02649 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.74■□□□□ 0.11
APOEP02649 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.74■□□□□ 0.11
APOEP02649 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
APOEP02649 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 CTBP2P5-201ENST00000454986 1264 ntBASIC15.74■□□□□ 0.11
APOEP02649 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
APOEP02649 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.74■□□□□ 0.11
APOEP02649 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.74■□□□□ 0.11
APOEP02649 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
APOEP02649 AC244669.2-201ENST00000612320 853 ntBASIC15.74■□□□□ 0.11
APOEP02649 AC132938.4-201ENST00000623835 848 ntBASIC15.74■□□□□ 0.11
APOEP02649 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.74■□□□□ 0.11
APOEP02649 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOEP02649 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms